barSeed - Barley Seed Development Database

Probe CUST_6031_PI390587928

Source Contig U35_3987

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6031_PI390587928	Hv_44K_v2	GAAGCACATATTGTTCCATTGTCTTTCACTCACATATTCATCAATCATGTTCATCACATC	1393	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370037	1546	2e-24	895 - 954	100	60 / 60	plus	ABC01494 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC09292 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC	MLOC_64718.10	2750	2e-24	2290 - 2349	100	60 / 60	plus	ABC09292 ABC21351
MLOC	MLOC_64718.6	2364	2e-24	1904 - 1963	100	60 / 60	plus	ABC09292 ABC21351
MLOC	MLOC_64718.4	1227	2e-24	808 - 867	100	60 / 60	plus	ABC09292 ABC21351
MLOC	MLOC_64718.7	1286	2e-24	826 - 885	100	60 / 60	plus	ABC09292 ABC21351
MLOC	MLOC_64718.5	1130	2e-24	718 - 777	100	60 / 60	plus	ABC09292 ABC21351
MLOC	MLOC_64718.2	2358	2e-24	1946 - 2005	100	60 / 60	plus	ABC09292 ABC21351
MLOC	MLOC_64718.3	3436	2e-24	3024 - 3083	100	60 / 60	plus	ABC09292 ABC21351
MLOC	MLOC_64718.1	2247	2e-24	1827 - 1886	100	60 / 60	plus	ABC09292 ABC21351
JLOC1	JLOC1_42521.8	3176	8e-25	2712 - 2771	100	60 / 60	plus
JLOC1	JLOC1_42521.4	1275	8e-25	811 - 870	100	60 / 60	plus
JLOC1	JLOC1_42521.3	1187	8e-25	723 - 782	100	60 / 60	plus
JLOC1	JLOC1_42521.2	1580	8e-25	1116 - 1175	100	60 / 60	plus
JLOC1	JLOC1_42521.1	1987	8e-25	1523 - 1582	100	60 / 60	plus
Harvest21	ABC09291	408	3e-25	346 - 405	100	60 / 60	plus
Harvest35	U35_3987	1456	3e-25	1394 - 1453	100	60 / 60	plus

Contig Sequence (1456 bp)

>U35_3987 1456 Hv_44K_v2
ATTTCAAATTGCCCCCTCTCGTGCTTCCTTTCCTCATTTAGGTTTTCGCTCTCTCCCTCC
TGCTAGTCGCCGAAATCGCCATGGCTCCCGCCTCCTGCCCGCCGACGGCGACGCCGCTGG
CTGCATCCTCGTCCCCGATAGACTCGCCATCGCTCAAGGCAGCCATCGCAATGGCTCTCA
TCCAGTACAAACGCCTCCCCTCGACAACCGCCGCCGCCGCCGCCGCGGGCACCACCTCCC
CGCCTCTTATTCACTGGAAGCGCAAGGCCAAGGAGCGGAAGCGCGAGATTCTCCGCCTCC
GCGAAGAGCTCAAGCTCCTCCAAGATGGGGTGCGCGGGGAGGCGATGGAGCCGCCAGTTG
CATCATGCCGCTGCCACTTCTTCGACGGGTGCAGCGACCTGCAGCCGCTGCCGCCAACGG
GTGGAGGGGAGCATTGGGTCGACGAGGTGCTGCGGAGGAGGTTCCTCAGATTGGCGCGGT
GGAAGGAGAAGCGACGGAGGCTGGATCGATCTCTTCCGGTCACTAGTTTGATGGAGATCA
ATAGCGAGGATGAGATACAACAGCTTAGCTTGTCGACTGATTTCCTGGTGGAGCTATCAG
ATGGGATATTTGCAAAAAGAGAACCATGCTCCACATTTGCTACATTCTCTCACCAAGCAG
TAGACTTCATTTTGGCTTTACTGAGGAACATTCTATCGTCGAAAAGGGAAAAGCAACTGG
TTGAGGAGATAATTGATGGTTTAGTGGCACGTTTGATGAAAAGGATGTGCACCATTCCTG
AAACTTCCGTACATGGATTGTCGCCTTCCATTTTGTTCAACTTTGCAGGACCAGTTGACT
GCTCAGATGCCCAATTCAATGTGCAGCACTTGTTCCGCAAATTAGGAAATGAAGAATTCG
TTGGTCAGCGGATAATCCTTGCAGTTTCTCAAAAGATCTCAAATGTATCAGAAAGCTTGC
TTCTCATAGATCCGTTTGATGATTCCTTCCCTGATATGAATGACAATATGTTCATTATGA
TTCAATTAATCGAGTTCCTCATATCTGATCACATGAAAAATTGGCTATGTTGCGAGCAAT
TTGACAAAAAAATATTTGAAGAATGGGTCAGATCTATTCTGAAGGCACGCAAGGACCTGG
AAATCCTAGAAAACAGAAATGCGCTGTATGTGGTGTACATTGAGCGAGTGGTCGGAAGGT
TGGCGAGAGAGGTGGCTTCTGCTGCTCACCAGGGGAAGCTGGACCTGGATGTCTTTTCCA
AACTTCTGTGCTGATCACTTCCAGCCTCAGACTTGAAAATGTATTACTCACAAGTTACTT
GACTGACCTTTTTCCAGTTCGTTTTTACTCCAGAAATTTGCTAATAAATCTATTGTTTTG
CTGTTCCATTCTGGAAGCACATATTGTTCCATTGTCTTTCACTCACATATTCATCAATCA
TGTTCATCACATCAAT

Homology of Contig U35_3987 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44180.1	369	2e-167	protein\|expressed protein
Brachypodium v1_2	Bradi3g42627.1	487	4e-166
Arabidopsis v10	AT5G57880.1	385	3e-66	\| Symbols: MPS1, ATPRD2, PRD2 \| multipolar spindle 1 \| chr5:23443977-23446439 FORWARD LENGTH=385