barSeed - Barley Seed Development Database

Probe CUST_5233_PI390587928

Source Contig U35_13726

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5233_PI390587928	Hv_44K_v2	GGTTTCGTGGAAACAGTTGATGGTATGGTTTGGTATGAATAAGTGAATTTGAACCAAAAA	1110	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354759	1306	7e-23	1121 - 1177	100	57 / 57	plus	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
MLOC	MLOC_13457.1	150	7e-23	87 - 143	100	57 / 57	minus	None
JLOC1	JLOC1_9115.1	698	4e-23	122 - 178	100	57 / 57	minus
Harvest21	ABC01106	666	3e-25	596 - 655	100	60 / 60	plus	ABC01106
Harvest21	ABC35550	194	1e-23	105 - 161	100	57 / 57	plus
Harvest35	U35_13726	1182	3e-25	1111 - 1170	100	60 / 60	plus

Contig Sequence (1182 bp)

>U35_13726 1182 Hv_44K_v2
GAAGTCGCTCAAGAACGAAGCGAACAAATCCCCAACCGATCTCGTCTCCGATCAACTCGA
GGCTCGTCGGATCCTCCTCCCACACCGCCTCAAGATGCAGATCTTTGTGAAGACATTGAC
TGGAAAGACCATCACCCTTGAGGTGGAGTCGTCTGACACAATCGACAATGTCAAGTCCAA
GATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTCATCTTTGCTGGCAAGCA
GCTCGAGGATGGCAGGACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCT
TGTCCTCCGCCTTCGTGGAGGCATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACCAT
CACCCTGGAGGTGGAATCATCCGACACCATCGACAACGTTAAGGCCAAGATCCAGGACAA
GGAAGGCATTCCCCCGGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGATGG
CAGGACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGCCT
TCGAGGAGGCATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACACTTGAGGT
GGAATCATCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCC
CCCGGACCAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTTGC
TGACTACAACATCCAGAAGGAGTCTACCCTCCACCTTGTCCTCCGCCTCCGTGGTGGTAT
GCAGATCTTTGTGAAGACCCTGACCGGGAAGACCATCACTTTGGAGGTTGAGAGTTCTGA
CACCATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCCCTGACCAGCA
GCGGCTGATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGCACCCTTGCCGACTACAACAT
CCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTCCGTGGTGGTCAGTAATTACACTG
ACGGTCCTGCTGCTATTAGTCGTATGTCTTGTTAGTGTTAAGTCTACTGTATCTGGTTTG
ATGGACCATCGAGTCCCCATGATGTTTGTTGGTTTCGTGGAAACAGTTGATGGTATGGTT
TGGTATGAATAAGTGAATTTGAACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13726 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g46770.6	306	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi3g04730.1	306
Arabidopsis v10	AT4G02890.3	305	\| Symbols: UBQ14 \| Ubiquitin family protein \| chr4:1278747-1279664 REVERSE LENGTH=305