barSeed - Barley Seed Development Database

Probe CUST_34710_PI390587928

Source Contig U35_13838

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34710_PI390587928	Hv_44K_v2	CAAGTGAGCCCTGTTTACGGTCTATAATTGTGTTGGTTCTGAATTTGATATATAATTCTG	1195	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360597	1495	2e-24	1425 - 1484	100	60 / 60	plus	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
MLOC	MLOC_12310.1	475	2e-24	231 - 290	100	60 / 60	minus	ABC01056 ABC49693
JLOC1	JLOC1_8259.1	594	8e-25	204 - 263	100	60 / 60	minus
Harvest21	ABC49693	615	3e-25	81 - 140	100	60 / 60	minus	ABC49693
Harvest21	ABC01112	882	3e-25	21 - 80	100	60 / 60	minus
Harvest21	ABC01109	875	3e-25	12 - 71	100	60 / 60	minus
Harvest21	ABC01056	1056	3e-25	28 - 87	100	60 / 60	minus	ABC01056
Harvest35	U35_48005	615	3e-25	81 - 140	100	60 / 60	minus
Harvest35	U35_13874	875	3e-25	805 - 864	100	60 / 60	plus
Harvest35	U35_13838	1281	3e-25	1196 - 1255	100	60 / 60	plus

Contig Sequence (1281 bp)

>U35_13838 1281 Hv_44K_v2
ACACATCCGATCCAATCCAATCCAATCCAGTCCCCTCTCCGATCGAAGCGAAGCCAAGGC
TCTCTCAAGATGCAGATCTTTGTGAAGACACTCACCGGCAAGACCATCACCCTCGAGGTT
GAGTCTTCTGACACGATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCT
CCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAACTGGAGGATGGCCGCACCTTGGCT
GACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCAGGCTCCGGGGTGGCATG
CAGATATTTGTTAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGAC
ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAG
CGTCTGATCTTCGCCGGTAAGCAGCTCGAAGATGGCCGCACCCTGGCGGACTACAACATC
CAGAAGGAGTCCACCCTCCACCTTGTCCTCCGGCTCCGTGGTGGCATGCAGATCTTTGTC
AAGACCCTCACCGGCAAGACTATCACCTTGGAGGTTGAGTCCTCGGACACCATCGACAAC
GTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTAATCTTT
GCCGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCTGACTACAACATCCAGAAGGAGTCC
ACCCTCCACCTGGTGCTCAGGCTCCGTGGTGGCATGCAGATCTTTGTCAAGACCCTCACC
GGCAAGACCATCACACTGGAGGTTGAGTCCTCGGACACCATTGACAACGTCAAGGCGAAG
ATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTTGCTGGTAAGCAG
CTCGAAGATGGCCGCACCCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTTCACTTG
GTGCTCCGGCTCCGTGGTGGCCAGTAAGCTCCTGTACATGGTGCTTCTGTTTCTGTGTTC
ACAAGTCTTCGTGCCTTAGTTGGAGTTGTCGTCCGTGTCTTTTCTAGTGTGTCGTCTGGG
TCTGTCGTTGGTGTCTTCGTTTCTACAGTACTGTGGTGCAGTGTTACTGGTTGGGTCTGA
AACTTCTGCTGTCGTGCAGCATGTTCGATGAGCTATGAGTAAGTGAGCCCTGAATCAAGT
GAGCCCTGTTTACGGTCTATAATTGTGTTGGTTCTGAATTTGATATATAATTCTGTTATT
TTCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g46770.6	306	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi3g04730.1	306
Arabidopsis v10	AT4G02890.3	305	\| Symbols: UBQ14 \| Ubiquitin family protein \| chr4:1278747-1279664 REVERSE LENGTH=305