- Probe CUST_34621_PI390587928
- Source Contig U35_13874
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_34621_PI390587928 | Hv_44K_v2 | CAAGTGAGCCCTGTTTACGGTCTATAATTGTGTTGGTTCTGAATTTGATATATAATTCTG | 804 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK360597 | 1495 | 2e-24 | 1425 - 1484 | 100 | 60 / 60 | plus | ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770 |
MLOC | MLOC_12310.1 | 475 | 2e-24 | 231 - 290 | 100 | 60 / 60 | minus | ABC01056 ABC49693 |
JLOC1 | JLOC1_8259.1 | 594 | 8e-25 | 204 - 263 | 100 | 60 / 60 | minus | |
Harvest21 | ABC49693 | 615 | 3e-25 | 81 - 140 | 100 | 60 / 60 | minus | ABC49693 |
Harvest21 | ABC01112 | 882 | 3e-25 | 21 - 80 | 100 | 60 / 60 | minus | |
Harvest21 | ABC01109 | 875 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | |
Harvest21 | ABC01056 | 1056 | 3e-25 | 28 - 87 | 100 | 60 / 60 | minus | ABC01056 |
Harvest35 | U35_48005 | 615 | 3e-25 | 81 - 140 | 100 | 60 / 60 | minus | |
Harvest35 | U35_13874 | 875 | 3e-25 | 805 - 864 | 100 | 60 / 60 | plus | |
Harvest35 | U35_13838 | 1281 | 3e-25 | 1196 - 1255 | 100 | 60 / 60 | plus |
Contig Sequence (875 bp)
>U35_13874 875 Hv_44K_v2 GGGCTGCAGGAATTCGGGCACGAGGGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGG ATGGCCGCACCTTGGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCA GGCTCCGTGGTGGCATGCAGATTTTCGTTAAGACTCTCACCGGCAAGACCATCACACTGG AGGTCGAGTCCTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCA TCCCTCCGGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCT TGGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCAGGCTCCGTGGTG GCATGCAGATTTTCGTTAAGACTCTCACCGGCAAGACCATCACACTGGAGGTCGAGTCCT CGGACACCATTGACAACGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACC AGCAGCGCCTAATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTGGCGGACTACA ACATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGGCTCCGTGGTGGCCAGTAAGCTC CTGTACATGGTGCTTCTGTTTCTGTGTTCACAAGTCTTCGTGCCTTAGTTGGAGTTGTCG TCCGTGTCTTTTCTAGTGTGTCGTCTGGGTCTGTCGTTGGTGTCTTCGTTTCTACAGTAC TGTGGTGCAGTGTTACTGGTTGGGTCTGAAACTTCTGCTGTCGTGCAGCATGTTCGATGA GCTATGAGTAAGTGAGCCCTGAATCAAGTGAGCCCTGTTTACGGTCTATAATTGTGTTGG TTCTGAATTTGATATATAATTCTGTTATTTTTGCC
Homology of Contig U35_13874 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os04g53620.4 | 230 | 3e-127 | protein|ubiquitin family protein, putative, expressed |
Brachypodium v1_2 | Bradi3g04730.2 | 230 | 2e-128 | |
Arabidopsis v10 | AT4G05050.1 | 229 | 1e-127 | | Symbols: UBQ11 | ubiquitin 11 | chr4:2588271-2588960 REVERSE LENGTH=229 |