- Probe CUST_14537_PI390587928
- Source Contig U35_13807
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14537_PI390587928 | Hv_44K_v2 | TTGGTGTCTTCGTTTCTACAGTACTGTGGTGCAGTGTTACTGGTTGGGTCTGAAACTTCT | 614 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK360597 | 1495 | 2e-24 | 1317 - 1376 | 100 | 60 / 60 | plus | ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770 |
| MLOC | MLOC_12310.1 | 475 | 2e-24 | 339 - 398 | 100 | 60 / 60 | minus | ABC01056 ABC49693 |
| JLOC1 | JLOC1_8259.1 | 594 | 8e-25 | 312 - 371 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC49693 | 615 | 3e-25 | 189 - 248 | 100 | 60 / 60 | minus | ABC49693 |
| Harvest21 | ABC01112 | 882 | 3e-25 | 129 - 188 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC01109 | 875 | 3e-25 | 120 - 179 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC01096 | 730 | 3e-25 | 615 - 674 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01056 | 1056 | 3e-25 | 136 - 195 | 100 | 60 / 60 | minus | ABC01056 |
| Harvest35 | U35_48005 | 615 | 3e-25 | 189 - 248 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_13874 | 875 | 3e-25 | 697 - 756 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13838 | 1281 | 3e-25 | 1088 - 1147 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13807 | 730 | 3e-25 | 615 - 674 | 100 | 60 / 60 | plus |
Contig Sequence (730 bp)
>U35_13807 730 Hv_44K_v2 CCAATCCAATCCAGTCCCCTCTCCGATCGAAGCGAAGCCAGGCTCTCTCAAGATGCAGAT CTTTGTGAAGACACTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCTGACACGAT CGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCT CATCTTCGCTGGCAAGCAACTGGAGGATGGCCGCACCTTGGCTGACTACAACATCCAGAA GGAGTCCACCCTCCACCTGGTGCTCAGGCTCCGGGGTGGCATGCAGATATTTGTTAAGAC TCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGACACCATCGACAACGTCAA GGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTGATCTTCGCCGG TAAGCAGCTCGAAGATGGCCGCACCCTGGCGGACTACAACATCCAGAAGGAGTCCACCCT TCACTTGGTGCTCCGGCTCCGTGGTGGCCAGTAAGCTCCTGTACATGGTGCTTCTGTTTC TGTGTTCACAAGTCTTCGTGCCTTAGTTGGAGTTGTCGTCCGTGTCTTTTCTAGTGTGTC GTCTGGGTCTGTCGTTGGTGTCTTCGTTTCTACAGTACTGTGGTGCAGTGTTACTGGTTG GGTCTGAAACTTCTGCTGTCGTGCAGCATGTTCGATGAGCTATGAGTAAGTGAGCCCTGA ATCAAGTAGC
Homology of Contig U35_13807 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g53620.4 | 230 | 3e-100 | protein|ubiquitin family protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g04730.2 | 230 | 1e-101 | |
| Arabidopsis v10 | AT4G05050.1 | 229 | 9e-101 | | Symbols: UBQ11 | ubiquitin 11 | chr4:2588271-2588960 REVERSE LENGTH=229 |