barSeed - Barley Seed Development Database

Probe CUST_11183_PI390587928

Source Contig U35_40798

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11183_PI390587928	Hv_44K_v2	TGATGAGCTATGAGTAAGGGAGCCCTGAATCAAGTGAGCCCTGTTTACGGTCTATAATTG	54	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360597	1495	3e-22	1396 - 1454	98	58 / 59	plus	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
MLOC	MLOC_12310.1	475	3e-22	261 - 319	98	58 / 59	minus	ABC01056 ABC49693
JLOC1	JLOC1_8259.1	594	1e-22	234 - 292	98	58 / 59	minus
Harvest21	ABC49693	615	5e-23	111 - 169	98	58 / 59	minus	ABC49693
Harvest21	ABC01112	882	5e-23	51 - 109	98	58 / 59	minus
Harvest21	ABC01109	875	5e-23	42 - 100	98	58 / 59	minus
Harvest21	ABC01056	1056	5e-23	58 - 116	98	58 / 59	minus	ABC01056
Harvest35	U35_40798	300	3e-25	55 - 114	100	60 / 60	minus
Harvest35	U35_48005	615	5e-23	111 - 169	98	58 / 59	minus
Harvest35	U35_13874	875	5e-23	776 - 834	98	58 / 59	plus
Harvest35	U35_13838	1281	5e-23	1167 - 1225	98	58 / 59	plus

Contig Sequence (300 bp)

>U35_40798 300 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAATAACAAAATTATATATCAAATTCCAAACCCACCCAATTA
TAGACCGTAAACAGGGCTCACTTGATTCAGGGCTCCCTTACTCATAGCTCATCAAACATG
CTGCACGACAGCAAAAGTTTCAAACCCAACCAGTAACCCTGCCCCACAGTACTGTAAAAA
CGAAAACCCCAACGACAGACCCAAACAACACCCTAAAAAAAACCCGGACGACAACTCCAA
CTAAGGGACGAAAACTTGTGAACACAAAAACAAAAGCCCCATGTACAGGAGCTTACTGGC

Homology of Contig U35_40798 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None