Tag: software
New in Tablet 1.10.05.21
Tablet has just been updated to version 1.10.05.21. BUG: Fixed a critical bug that was resulting in some contigs hiding reads when in packed mode.
New in Tablet 1.10.05.18
Tablet has just been updated to version 1.10.05.18. NEW: Implemented a new, hopefully more robust, method of determining the version number for update purposes. NEW: Added an option to set Picard’s SAMFileReader validation stringency to lenient to suppress SamValidation errors. NEW: Added a parse-time option force DNA ambiguity codes to be read as […]
New in Flapjack 0.10.05.17
Flapjack has just been updated to version 0.10.05.17. NEW: Implemented a more robust method for version checking and updating of Flapjack CHG: Added the “Close” button back to the Filter QTLs dialog. BUG: Filtering QTL using the Filter dialog wasn’t working until after the display had been manually refreshed.
New in Flapjack 0.10.05.07
Flapjack has just been updated to version 0.10.05.07. CHG: Minor modifications (for Windows only) to improve compatibility with Windows 7.
New in Tablet 1.10.05.06
Tablet has just been updated to version 1.10.05.06. NEW: Added a new colouring scheme based on read direction/orientation. NEW: The overview displays can now be “subsetted”, forcing them to show only an overview of whatever region you define for them. NEW: Variant highlighting (in red) can now be turned on or off for the […]
New in Flapjack 0.10.04.27
Flapjack has just been updated to version 0.10.04.27. NEW: Implemented multicore/cpu rendering for the main canvas. NEW: Added an option to sort lines by importing an external file that contains the order to put them in (one “line” per line). CHG: Removed the ability to back-buffer the entire main canvas. BUG: Fixed some rendering […]
New in Flapjack 0.10.03.10
Flapjack has just been updated to version 0.10.03.10. NEW: Implemented three new methods of scaling and displaying the chromosome map: local, global, and classic. NEW: Added a new summary “mini map” display that shows where on the chromosome the markers currently on screen are. NEW: Gaps in the data set (lines with no […]
New in Tablet 1.10.03.04
Tablet has just been updated to version 1.10.03.04. NEW: Added support for indexed BAM assemblies. NEW: Added a new navigation bar for moving the viewing window around within a larger BAM assembly. NEW: Implemented background (multicore) thread support for calculating auxiliary display data, meaning large contigs can now be viewed instantly. NEW: Various […]
New in Tablet 1.10.02.08
Tablet has just been updated to version 1.10.02.08. NEW: Added (experimental) support for BAM, using in-memory only reading for now, NOT indexed support. NEW: Support for most CIGAR operations, with the positions of Insertions being tagged as features for now. NEW: Displayed consensus sequences now use 8 bytes per base less memory. NEW: […]
New in Tablet 1.10.01.28
Tablet has just been updated to version 1.10.01.28. NEW: Added a right-click “save a summary of read information (per contig)” option to the contigs table. NEW: Tablet can now read from http streams (supported on the command line and the Open Assembly dialog). NEW: Tablet can now read from compressed gzip data streams […]