barSeed - Barley Seed Development Database

Probe CUST_34489_PI390587928

Source Contig U35_31005

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34489_PI390587928	Hv_44K_v2	TCCGGGTTCTCAATGTTCCTGTGAAATAGTTTCTGTAATGTTCAGATTTGGGTGGTGCAT	485	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357004	1103	2e-24	1040 - 1099	100	60 / 60	plus	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
MLOC	MLOC_17066.1	940	2e-24	705 - 764	100	60 / 60	minus	None
JLOC1	JLOC1_11787.1	1002	8e-25	492 - 551	100	60 / 60	minus
Harvest21	ABC31146	548	3e-25	486 - 545	100	60 / 60	plus
Harvest35	U35_31005	548	3e-25	486 - 545	100	60 / 60	plus

Contig Sequence (548 bp)

>U35_31005 548 Hv_44K_v2
GTCGTCAGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCC
GGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCGCGGA
CTACAACATTCAGAAGGAGTCCACCCTTCACCTGGTGCTCCGCCTCCGTGGTGGTCAGTA
AACATCCTGGTTCGTCCTGCGGGTGGTGCCCTGTTTCGATAATTTGAACTGTTATCTTGT
TCGCGTCAGTCCTATCGTGTTTGTTTGATGAACTATCGAGTCACCTATGGGTTTTAAACA
GTTGCTGGTACAGCAGTATTATTGAGTAATGAATAAGTGAACTTCGGGTAAATTTGCTTT
TGCTTGCGCTCATTTACTGTTGATTTTATAACTTGTGCTTGAATTGCTTGCTTGCAGTCT
AGATCTTGCAATGATCTTACTAATATTTCCTTTTGCGATTTTCTTTCTGGACTATGATCC
TAATTTCCGGGTTCTCAATGTTCCTGTGAAATAGTTTCTGTAATGTTCAGATTTGGGTGG
TGCATGTA

Homology of Contig U35_31005 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None