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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_23509_PI390587928Hv_44K_v2GATGAACTATCGAGTCACCTATGGTTTTAAACAGTTGCTGGTACAGCAGTATTATTAGTA0GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK37130316349e-221552 - 16139760 / 62plus ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
MLOCAK35700411039e-22821 - 8829760 / 62plus ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
JLOC1JLOC1_11787.110025e-22709 - 7709760 / 62minus
Harvest21ABC508206883e-251 - 6010060 / 60minus
Harvest21ABC507704432e-229 - 709760 / 62minusABC50770
Harvest21ABC490113902e-22292 - 3539760 / 62plusABC49011
Harvest21ABC311465482e-22267 - 3289760 / 62plus
Harvest21ABC011154552e-22356 - 4179760 / 62plus
Harvest21ABC010279852e-2239 - 1009760 / 62minus
Harvest21ABC010847248e-21621 - 6829559 / 62plus
Harvest35U35_489616883e-251 - 6010060 / 60minus
Harvest35U35_310055482e-22267 - 3289760 / 62plus
Harvest35U35_138134552e-22356 - 4179760 / 62plus
Harvest35U35_1365216222e-221506 - 15679760 / 62plus



Contig Sequence (688 bp)

>U35_48961 688 Hv_44K_v2
TACTAATAATACTGCTGTACCAGCAACTGTTTAAAACCATAGGTGACTCGATAGTTCATC
AAACAAACACGATAGGACTGACGCGAACAAGATAACAGTTCAAATTATCGAAACAGGGCA
CCACCCGCAGGACGAACCAGGATGTTTACTGACCACCACGGAGGCGGAGCACCAGGTGAA
GGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGTGTGCGGCCATCCTCCAGCTGCTTGC
CTGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCT
TGACGTTGTCAATGGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGG
TCTTCACGAAGATCTGCATGCCACCACGCAGACGGAGGACAAGGTGGAGGGTGGACTCCT
TCTGGATGTTGTAGTCCGCGAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCA
GGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGA
TGGTGTAGAAGCTCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGA
TCTGCATCTTGAGGCGGCGGGGAGGAGGATTCGACGAGCTCTCGAGTCGATCGGAGACGA
AATTGGGTGGGGATTTGCTTCCTCGTGC



Homology of Contig U35_48961 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g53620.42303e-98protein|ubiquitin family protein, putative, expressed
Brachypodium v1_2Bradi3g04730.22302e-99
Arabidopsis v10AT4G05050.12291e-98| Symbols: UBQ11 | ubiquitin 11 | chr4:2588271-2588960 REVERSE LENGTH=229