barSeed - Barley Seed Development Database

Probe CUST_18646_PI390587928

Source Contig U35_13652

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18646_PI390587928	Hv_44K_v2	GGGTTTTAAACAGTTGCTGGTACAGCAGTATTATTGAGTAATGAATAAGTGAACTTCGGG	1527	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371303	1634	2e-24	1574 - 1633	100	60 / 60	plus	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
MLOC	AK357004	1103	2e-24	843 - 902	100	60 / 60	plus	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
JLOC1	JLOC1_11787.1	1002	8e-25	689 - 748	100	60 / 60	minus
Harvest21	ABC49011	390	3e-25	314 - 373	100	60 / 60	plus	ABC49011
Harvest21	ABC31146	548	3e-25	289 - 348	100	60 / 60	plus
Harvest21	ABC01115	455	3e-25	378 - 437	100	60 / 60	plus
Harvest21	ABC01084	724	3e-25	643 - 702	100	60 / 60	plus
Harvest21	ABC01027	985	3e-25	19 - 78	100	60 / 60	minus
Harvest35	U35_31005	548	3e-25	289 - 348	100	60 / 60	plus
Harvest35	U35_13813	455	3e-25	378 - 437	100	60 / 60	plus
Harvest35	U35_13652	1622	3e-25	1528 - 1587	100	60 / 60	plus

Contig Sequence (1622 bp)

>U35_13652 1622 Hv_44K_v2
GTTTGTTTATTCTCTAACGTCTGTAGATTTATTTTTCTTGGAAAAGCTTTGATGATGCGC
ATGTCTGTCAGCAACGTGGAATCACAATCTTTAGTTCCGGTCATGAGCATGCACCATCTG
TTATTTTCTCTTGAATGAAAAGAAATATGCTACTGCCTGTTTGTTTATTCTCTACGCTGT
TGGTGTATAGTAGAAGCTTACAATAAATATTTCTCCTAGTTTGCTTTTGACTGCTTCTTG
AAGCTCACCATTCTGTTTTGGATGTCTCGGCAGTATGCAGATCTTTGTGAAGACCCTCAC
CGGCAAGACCATCACCCTTGAGGTTGAGAGCTCTGACACCATCGACAACGTCAAGGCCAA
GATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAACGCCTCATCTTTGCCGGCAAGCA
GCTGGAGGATGGCCGCACCCTTGCGGACTACAACATCCAGAAGGAGTCCACCCTCCACCT
TGTGCTCCGCCTGCGTGGTGGTATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCAT
CACCCTTGAGGTTGAGAGCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAA
GGAGGGCATTCCTCCGGATCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGG
CCGCACCCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGTCT
GCGTGGTGGCATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGT
TGAGAGCTCTGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCC
CCCGGACCAGCAGCGCCTGATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACACTTGC
TGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTGCGTGGTGGTAT
GCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGAGCTCTGA
CACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCA
GCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTACAACAT
CCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTTAGGGGTGGCATGCAGATCTTTGT
GAAGACCCTCACCGGCAAGACTATCACTCTTGAGGTGGAGTCGTCAGACACCATTGACAA
TGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTT
CGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCGCGGACTACAACATTCAGAAGGAGTC
CACCCTTCACCTGGTGCTCCGCCTCCGTGGTGGTCAGTAAACATCCTGGTTCGTCCTGCG
GGTGGTGCCCTGTTTCGATAATTTGAACTGTTATCTTGTTCGCGTCAGTCCTATCGTGTT
TGTTTGATGAACTATCGAGTCACCTATGGGTTTTAAACAGTTGCTGGTACAGCAGTATTA
TTGAGTAATGAATAAGTGAACTTCGGGTAAAAAAAAAAAAAAAAAAATTTGCTTTTGCTT
GC

Homology of Contig U35_13652 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g42424.1	382	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi1g32700.1	382
Arabidopsis v10	AT5G20620.1	382	\| Symbols: UBQ4 \| ubiquitin 4 \| chr5:6973315-6974463 REVERSE LENGTH=382