- Probe CUST_4457_PI390587928
- Source Contig U35_37652
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4457_PI390587928 | Hv_44K_v2 | TATGTGTGGTTAAACTGTTGCTGGTACAGCAGTATCATCAACTAATGAATAAGTGAACTT | 655 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252178.1 | 1017 | 7e-23 | 952 - 1012 | 98 | 60 / 61 | plus | ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770 |
| MLOC | MLOC_69214.1 | 256 | 7e-23 | 9 - 69 | 98 | 60 / 61 | plus | ABC28899 |
| MLOC | AK249379.1 | 803 | 3e-22 | 723 - 782 | 98 | 59 / 60 | plus | ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770 |
| JLOC1 | JLOC1_45853.1 | 429 | 4e-23 | 220 - 280 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC35249 | 541 | 1e-23 | 443 - 503 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC28899 | 186 | 1e-23 | 41 - 101 | 98 | 60 / 61 | plus | ABC28899 |
| Harvest21 | ABC01098 | 472 | 1e-23 | 25 - 85 | 98 | 60 / 61 | minus | |
| Harvest21 | ABC01042 | 1006 | 1e-23 | 924 - 984 | 98 | 60 / 61 | plus | ABC01042 |
| Harvest35 | U35_37652 | 715 | 3e-25 | 656 - 715 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13808 | 441 | 1e-23 | 357 - 417 | 98 | 60 / 61 | plus | |
| Harvest35 | U35_13733 | 1110 | 1e-23 | 942 - 1002 | 98 | 60 / 61 | plus | |
| Harvest35 | U35_13714 | 539 | 1e-23 | 443 - 503 | 98 | 60 / 61 | plus |
Contig Sequence (715 bp)
>U35_37652 715 Hv_44K_v2 CAAATCCCCAACCAATCTCGTCTCCAATCGACCCGAGGCTCGTCGAATCCTCCTCCCCCG CCGCTTCAAGATGCAGATCTTTGTGAAGACATTGACGGGCAAGACCATCACCCTTGAGGT GGAATCCTCTGACACAATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCC CCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTTGC TGACTACAATATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGCCTTCGGGGAGGCAT GCAGATCTTCGTGAAGACCCTGACTGGGAAGACCATCACTCTGGAGGTGGAGAGCTCAGA CACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCA GCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGTCGGACCCTTGCGGACTACAACAT CCAGAAGGAGTCTACCCTTCACCTGGTGCTCCGCCTCCGTGGTGGTCAGTAATTGCCCTA GCGTTGGAAGTCCTGNGTCGTCCGGTGGGCGGTGCCCTGTCTGTTCAATTGAACTGTNTT CTCGTTTGCGTCTGTCCTCCTGTGGTTGGTTTAATGAACTATAGAGTCACCGTGTTATGT GTGGTTAAACTGTTGCTGGTACAGCAGTATCATCAACTAATGAATAAGTGAACTT
Homology of Contig U35_37652 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g53620.4 | 230 | 3e-93 | protein|ubiquitin family protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g04730.2 | 230 | 1e-93 | |
| Arabidopsis v10 | AT4G05050.1 | 229 | 1e-93 | | Symbols: UBQ11 | ubiquitin 11 | chr4:2588271-2588960 REVERSE LENGTH=229 |