barSeed - Barley Seed Development Database

Probe CUST_34700_PI390587928

Source Contig U35_13840

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34700_PI390587928	Hv_44K_v2	TTGGTTTAAACAGTTGCTGGTATAGCAGTATTATTTAGTAATGAATAAGCGAACATCCGG	931	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372915	1481	2e-24	1387 - 1446	100	60 / 60	plus	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
MLOC	MLOC_21796.1	415	2e-24	214 - 273	100	60 / 60	plus	ABC01072
JLOC1	JLOC1_15111.1	386	8e-25	214 - 273	100	60 / 60	plus
Harvest21	ABC37061	449	3e-25	79 - 138	100	60 / 60	minus
Harvest21	ABC01076	506	3e-25	384 - 443	100	60 / 60	plus
Harvest21	ABC01072	1035	3e-25	912 - 971	100	60 / 60	plus	ABC01072
Harvest21	ABC32724	163	2e-21	76 - 133	97	58 / 60	plus
Harvest35	U35_41823	449	3e-25	79 - 138	100	60 / 60	minus
Harvest35	U35_13840	1054	3e-25	932 - 991	100	60 / 60	plus

Contig Sequence (1054 bp)

>U35_13840 1054 Hv_44K_v2
CTCACCACCGCTCCCCGGAACAAGCAAATCCCCACCCAATTTCGTCTCCGATCGACTCGA
GAGCTCGTCGAATCCTCCTCCCCGCCGCCTCAAGATGCAGATCTTCGTGAAGACCCTCAC
TGGCAAGACCATCACCCTTGAGGTTGAGAGCTCTGACACCATCGACAACGTCAAGGCCAA
GATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTCATCTTTGCCGGCAAACA
GCTGGAGGATGGCCGCACCCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCCACCT
TGTGCTCCGCCTGCGTGGTGGTATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCAT
CACCCTTGAGGTTGAGAGCTCTGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAA
GGAGGGCATCCCCCCGGACCAGCAACGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGG
CCGCACCCTTGCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTGCTCCGCCT
TCGGGGAGGGATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAGGT
GGAGTCGTCCGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCC
CCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTGC
GGACTACAACATTCAGAAGGAGTCCACCCTTCACCTGGTGCTCCGCCTCCGTGGTGGTCA
GTAATTGCCCTGGCGTTGGACATCCTGGTGGTGGTCAGTAATTGCCCTGGCGTTGGACAT
CCTGGTGGTCGTTCGTCCGGCGGATCATTGAACTGTTATCTCGTTCGTGTCAGTCCTATT
GTGTTTGTTTGATGAACTATCGAGTCATGTGTTGGTTTAAACAGTTGCTGGTATAGCAGT
ATTATTTAGTAATGAATAAGCGAACATCCGGTAAAAAAAAAAAAAAAAATTTACTGTTGA
TTTTCTAACTTGCGCTTAAAAAAGAAAAAAAAAA

Homology of Contig U35_13840 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g46770.6	306	1e-155	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi3g04730.2	230	3e-157
Arabidopsis v10	AT4G05050.1	229	2e-156	\| Symbols: UBQ11 \| ubiquitin 11 \| chr4:2588271-2588960 REVERSE LENGTH=229