barSeed - Barley Seed Development Database

Probe CUST_34666_PI390587928

Source Contig U35_13859

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34666_PI390587928	Hv_44K_v2	AGGTCTGATGTTTGCTGTTTTTGTTATACTGTGGTTTCTTGCTATCTTTCTGATGCCATT	928	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360704	1727	3e-22	1626 - 1684	98	59 / 60	plus	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
MLOC	MLOC_17076.1	689	3e-22	202 - 260	98	59 / 60	plus	ABC01058 ABC01110 ABC01117 ABC39599 ABC40971
JLOC1	JLOC1_11794.1	375	1e-22	202 - 260	98	59 / 60	plus
Harvest35	U35_13859	997	3e-25	929 - 988	100	60 / 60	plus

Contig Sequence (997 bp)

>U35_13859 997 Hv_44K_v2
CTCCACACATACGATCCAACCTCCAACCTCACACAGAAATCAGCGCCAAGGCTCTCTCCC
CATCCTCAAGATGCAAATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGT
CGAGTCTTCCGACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCC
TCCGGACCAGCAGCGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTGGC
TGACTACAACATCCAGAAGGAATCTACCCTCCACCTGGTGCTCAGGCTTCGTGGTGGCAT
GCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTTGAGTCGTCAGA
CACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCA
GCGCCTCATCTTTGCTGGCAAACAACTCGAGGATGGCCGCACCCTGGCTGACTACAACAT
CCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTTCGTGGTGGCATGCAAATCTTTGT
CAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGTCATCTGACACCATTGACAA
CGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTCATCTT
TGCCGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAACATCCAGAAGGAGTC
GACCCTTCACTTGGTGCTCCGTCTGCGTGGTGGCCACTAAGCTCCTGGTGATGGAGCTGC
TCCTGTCTCTAGGTTCACAAGGCTCGGTGTCTCTGGTGTTCTAATGGAGTCTCGTCTGTG
TCTTTGTTTCTGTACCGTACTGTGATGCAGTTTTATCGTTTGTATCTTTGAACTATGAAT
AAGTGAGCCCTGAACCTCTGCTGTCTCTAGGTCTGATGTTTGCTGTTTTTGTTATACTGT
GGTTTCTTGCTATCTTTCTGATGCCATTTGATGTTTT

Homology of Contig U35_13859 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53620.4	230	8e-148	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi3g04730.2	230	5e-149
Arabidopsis v10	AT4G05050.1	229	4e-149	\| Symbols: UBQ11 \| ubiquitin 11 \| chr4:2588271-2588960 REVERSE LENGTH=229