barSeed - Barley Seed Development Database

Probe CUST_15758_PI390587928

Source Contig U35_13785

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15758_PI390587928	Hv_44K_v2	CAGTTTTATCGTTTGTATCTTTGAACTATGAATAAGTGAGCCCTGAACCTCTGCTGTCTC	1636	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360704	1727	2e-24	1565 - 1624	100	60 / 60	plus	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
MLOC	MLOC_17076.1	689	2e-24	141 - 200	100	60 / 60	plus	ABC01058 ABC01110 ABC01117 ABC39599 ABC40971
JLOC1	JLOC1_11794.1	375	8e-25	141 - 200	100	60 / 60	plus
Harvest21	ABC01083	1258	3e-25	1181 - 1240	100	60 / 60	plus
Harvest35	U35_13859	997	3e-25	868 - 927	100	60 / 60	plus
Harvest35	U35_13785	1716	3e-25	1637 - 1696	100	60 / 60	plus

Contig Sequence (1716 bp)

>U35_13785 1716 Hv_44K_v2
TTCCTTCCTCCCACCGCTCCCGTCCGATCCAATCCCGGCTATAAATTCCCCGCCCCCTCC
CGTCTCCTCCTCCACACATCCGATCCGATCCAATCCAATCCAGTCCCCTTTCCGATCGAA
GCGAAGCCAAGGCTCTCTCGTCCTCCTCCTTCAAGATGCAGATCTTTGTGAAGACCCTGA
CCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGACACCATCGACAACGTCAAGGCTA
AGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGTCTCATCTTTGCTGGCAAGC
AGCTTGAGGATGGCCGCACCCTGGCCGACTATAACATCCAGAAGGAGTCCACACTCCACC
TGGTGCTCAGGCTCCGTGGTGGCATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCA
TCACCCTGGAGGTTGAGTCCTCTGACACCATCGACAATGTGAAGGCCAAGATCCAGGACA
AGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGATG
GCCGCACCCTGGCTGACTATAACATCCAGAAGGAGTCCACACTCCACCTGGTGCTCAGGC
TCCGTGGTGGCATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGG
TCGAGTCCTCTGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTC
CCCCGGACCAGCAGCGTCTAATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTG
CGGATTACAACATTCAGAAGGAATCCACCCTCCACCTGGTGCTCAGGCTTCGCGGTGGCA
TGCAAATCTTTGTAAAGACCCTCACCGGCAAGACCATCACATTGGAGGTGGAGTCTTCGG
ACACCATTGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGC
AGCGTCTAATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGTACCTTGGCGGACTACAACA
TCCAGAAGGAGTCGACCCTTCACTTGGTGCTCCGTCTGCGTGGTGGTATGCAGATCTTTG
TCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCGGACACCATTGACA
ATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTCATCT
TTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTTGCTGACTACAACATCCAGAAGGAGT
CCACTCTCCATCTGGTGCTCAGGCTCCGTGGTGGTATGCAGATCTTCGTCAAGACCCTCA
CCGGCAAGACCATCACGCTGGAGGTTGAGTCCTCGGACACCATTGACAATGTGAAGGCGA
AGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTTGCTGGTAAGC
AGCTTGAGGATGGCCGCACCTTGGCGGACTACAACATCCAGAAGGAGTCGACCCTTCACT
TGGTGCTCCGTCTGCGTGGTGGCCACTAAGCTCCTGGTGATGGAGCTGCTCCTGTCTCTA
GGTTCACAAGGCTCGGTGTCTCTGGTGTTCTAATGGAGTCTCGTCTGTGTCTTTGTTTCT
GTACCGTACTGTGATGCAGTTTTATCGTTTGTATCTTTGAACTATGAATAAGTGAGCCCT
GAACCTCTGCTGTCTCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13785 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g46770.2	534	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi1g32700.1	382
Arabidopsis v10	AT4G05320.2	457	\| Symbols: UBQ10 \| polyubiquitin 10 \| chr4:2718559-2719932 FORWARD LENGTH=457