barSeed - Barley Seed Development Database

Probe CUST_14502_PI390587928

Source Contig U35_13834

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14502_PI390587928	Hv_44K_v2	GTCTTTGTTTCTGTACCGTACTGTGATGCAGTTTTATCGTTTGTATCTTTGAACCTGCTT	867	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360704	1727	3e-21	1537 - 1590	100	54 / 54	plus	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
MLOC	MLOC_17076.1	689	3e-21	113 - 166	100	54 / 54	plus	ABC01058 ABC01110 ABC01117 ABC39599 ABC40971
JLOC1	JLOC1_11794.1	375	2e-21	113 - 166	100	54 / 54	plus
Harvest21	ABC01110	656	3e-25	1 - 60	100	60 / 60	minus	ABC01110
Harvest21	ABC01083	1258	6e-22	1153 - 1206	100	54 / 54	plus
Harvest35	U35_13834	927	3e-25	868 - 927	100	60 / 60	plus
Harvest35	U35_13859	997	6e-22	840 - 893	100	54 / 54	plus
Harvest35	U35_13785	1716	6e-22	1609 - 1662	100	54 / 54	plus

Contig Sequence (927 bp)

>U35_13834 927 Hv_44K_v2
ACATCCGACCCAATCCGATCCAGTCCCCTCTCCGATCTCGCCGGGAAATCTCCTCCGATC
GAAGCGAAGCGAAGCCTCTGTCCTCCTCTCTCCTCAAGATGCAGATATTCGTCAAGACCC
TTACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACCATCGACAATGTCAAGG
CAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTAATCTTCGCTGGCA
AGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAACATCCAGAAGGAGTCCACCCTCC
ACCTGGTGCTCAGGCTTCGTGGTGGTATGCAGATCTTCGTCAAGACCCTCACTGGCAAGA
CCATCACCCTTGAGGTCGAGTCCTCTGACACCATCGACAACGTCAAGGCAAAGATCCAGG
ACAAGGAGGGCATTCCCCCGGACCAGCAGCGTTTAATCTTTGCTGGCAAGCAGCTCGAGG
ATGGCCGCACCCTTGCGGACTACAACATCCAGAAGGAATCCACCCTCCACCTTGTCCTCC
GCCTTCGTGGTGGTATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACCATCACCCTGG
AGGTTGAGTCCTCTGACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCA
TCCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGTACCT
TGGCGGACTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTGCTCCGTCTGCGTGGTG
GGCAGTAAGCTCCTGGTGATGGAGCTGCTTCTGTCTCTAGGTTCACAAGGCTCGGTGTCT
GGTGTTCTCTATTGGAGTCTCGTCTGTGTCTTTGTTTCTGTACCGTACTGTGATGCAGTT
TTATCGTTTGTATCTTTGAACCTGCTT

Homology of Contig U35_13834 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g46770.6	306	2e-156	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi3g04730.2	230	6e-158
Arabidopsis v10	AT4G05050.1	229	4e-157	\| Symbols: UBQ11 \| ubiquitin 11 \| chr4:2588271-2588960 REVERSE LENGTH=229