barSeed - Barley Seed Development Database

Probe ABC01977

Source Contig ABC01977

barSeed

Links

Affymetrix Source Sequence (966 bp)

>ABC01977 966
GGCCGTATTATTGGAGGAACCTCTCAAGTTTGCCAAACATTCGATTGAGTCCACGGACCA
AGAATTGCTACCCGGGAAGAAGGCTAACAGGGTACTTTCTGAGATTACTAATTCATGAAT
ATATTAGTTATGAACTGCAACCCGTTAAATGAACGCAAAAAGGTAATCAACTTTACCAGA
AGTGGCAAAAGGAACAGGCGAAGATAGAGCGTGAGGGTAAAGATGTTATGATTACTGCAT
TCTCCAAGATGGTCGGTTATGCTCTTCAGGACGTCACATTGAGATACTGTCCAAGGAAGG
AATCAGTGCTGAGGTGATCAACCTCCGATCAATTAGGCCACTGGATAGAGCCGCCATAAA
TGCATTTGTTAGGAAAACAAATAGATTGGTGACTCTTGAAGAAGGCTTCCCCCAGCATGG
TGTTGGTGCTGAGATATGCATGTCTGTTGTAGAAGAAAGATTTGAGTATCTTGATGCTCC
AATTGAGAGGATTGCTGGAGCTGATGTACCCATGCCCTATGCTCCCAACCTTGAGAGATT
GGCTGTCCCACAGGTTAGCTTGATGTTTGTTTGCCTAGTGCATAGAGATGCCGTCGTATG
TCGTGTACAAGGGTAAGGTTCTCGGAGTCTACGATGATTGGGAGGAGTGTCGGAGACAGG
TTCACCGTTTCAGCGGTAACAATTACAAAGGGTACACCACAAGGGCAGAGGTGGAAGTTA
GATACACGCGCTATCTAGCGGGAGAGAGGAGGGAGCGTTGGAGGAACCAGATGAAGACCA
GTTTCATCGCGATTATGCTCATCGTGATGACCGCAACTATCTTCTATGTGATGGTAGTTT
AGATGATCGACATTGACTTGTAATGTGAAGACAAACTCGCTACTCGCGGTCTCGAGACTT
GTAATGTTCTAACTTTGTTCGGTATTTTAAATTCGAAGACTAATATGAGTAATTGTATTC
GGAGAC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK362112	1577	1e-162	867 - 1214	96	340 / 353	CUST_41878_PI390587928	ABC01977 ABC03299
AK375665	921	2e-151	524 - 906	92	354 / 385	None	ABC01965 ABC01966 ABC01968 ABC01971 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC39062 ABC41020 ABC43517 ABC49701
MLOC_49422.2	489	4e-147	1 - 310	97	301 / 310	None	ABC01977 ABC03299
MLOC_49422.1	362	3e-143	1 - 362	93	336 / 362	None	ABC01977 ABC03299
AK355554	797	2e-135	431 - 797	90	343 / 380	None	ABC01965 ABC01966 ABC01968 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK362294	1381	2e-126	1081 - 1380	94	282 / 300	CUST_64_PI415269222 CUST_10588_PI390587928	ABC01965 ABC01966 ABC01968 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC24714 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK354213	708	1e-123	425 - 707	95	269 / 283	None	ABC01965 ABC01966 ABC01968 ABC01972 ABC01977 ABC02389 ABC04148 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK250044.1	1508	1e-117	1120 - 1429	92	284 / 310	CUST_19173_PI390587928	ABC01481 ABC01962 ABC01965 ABC01966 ABC01968 ABC01971 ABC01972 ABC01977 ABC02389 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517
AK251482.1	1651	1e-117	1306 - 1590	94	267 / 285	CUST_6650_PI390587928 CUST_21677_PI390587928	ABC01965 ABC01966 ABC01968 ABC01972 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
MLOC_376.1	270	2e-116	1 - 270	95	256 / 270	None	ABC01977 ABC03299
MLOC_49422.3	252	1e-103	1 - 226	97	219 / 226	None	ABC01977 ABC03299
MLOC_33039.2	641	4e-93	340 - 549	96	203 / 211	CUST_21988_PI390587928	ABC01977
AK375073	933	5e-92	602 - 929	85	295 / 346	None	ABC01971 ABC01976 ABC01977 ABC02466 ABC02467 ABC02468 ABC32938 ABC41020
MLOC_376.2	252	1e-77	71 - 252	96	174 / 182	None	ABC01977 ABC03299
AK361796	1608	4e-73	1257 - 1481	89	201 / 226	None	ABC01481 ABC01482 ABC01971 ABC01972 ABC01976 ABC01977 ABC32938 ABC41020 ABC42385 ABC43517
MLOC_33039.1	543	5e-67	341 - 491	97	148 / 152	CUST_21988_PI390587928	ABC01977
MLOC_33039.3	767	5e-67	339 - 489	97	148 / 152	CUST_21988_PI390587928	ABC01977
AK252912.1	2576	1e-62	2388 - 2556	93	157 / 169	CUST_5116_PI390587928 CUST_23105_PI390587928	ABC01965 ABC01966 ABC01968 ABC01971 ABC01977 ABC02389 ABC09455 ABC11496 ABC12720 ABC24152 ABC32938 ABC38666 ABC41020 ABC43517 ABC49701
MLOC_21735.1	951	8e-55	835 - 951	100	117 / 117	None	ABC01977
MLOC_47790.1	116	1e-52	1 - 113	100	113 / 113	None	ABC01977