barSeed - Barley Seed Development Database

Probe ABC43517

Source Contig ABC43517

barSeed

Links

Affymetrix Source Sequence (577 bp)

>ABC43517 577
TTTTCGAGCCAAAGTGACTGTCCCGTTTGTCTGTTGAAGAAGTTCCTGAGGGGGACTATA
TGACGCCTTTATCCCAGGCGGAAGTGATCCGCAAAGGAAGTGATATAACACTTGTTGGTT
GGGGAGCTCAACTTGAAGTGCTGGAACAAGCATGTGAAGATGCTTCAAAGTGCATAGAGA
TGCCGTCGTATGTCGTGTACAAGGGTAAGGTTCCCGGAGTCTACGACGACTGGGAGGAGT
GTCGGAGACAGGTTCACCGATTCAGCGGTAACAGTTACAAAGGGTACCCCCCAAGGGCGG
AGGCGGAAGTTAGATACGCGCGCTATCTAGCGGGAGAGAGGAGGGAGCGTTGGAGGAACC
GGATGAAGACCCGTTTCATTGTGATTATGCTCATCGTGATGACCAAAGCTCTCTTCTATG
TGATGGTAGTTTAGATGGTCATATCGACTTGTAATGTGAAGACAAACTCGCTACTCGCGG
TCTCGAGACTTGTAATGTTCTAACTTTGTTCGGTATTTTAAATTCGGAGACTAATATGAT
CAAAAGTATCGGAGTTTAATAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK375665	921	1e-165	524 - 891	95	351 / 368	None	ABC01965 ABC01966 ABC01968 ABC01971 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC39062 ABC41020 ABC43517 ABC49701
AK355554	797	3e-136	431 - 786	91	336 / 369	None	ABC01965 ABC01966 ABC01968 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK250044.1	1508	2e-119	1120 - 1429	92	285 / 310	CUST_19173_PI390587928	ABC01481 ABC01962 ABC01965 ABC01966 ABC01968 ABC01971 ABC01972 ABC01977 ABC02389 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517
AK362294	1381	6e-119	1083 - 1378	93	275 / 296	CUST_64_PI415269222 CUST_10588_PI390587928	ABC01965 ABC01966 ABC01968 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC24714 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK354213	708	3e-117	425 - 705	94	264 / 281	None	ABC01965 ABC01966 ABC01968 ABC01972 ABC01977 ABC02389 ABC04148 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK251482.1	1651	3e-111	1306 - 1588	93	262 / 283	CUST_6650_PI390587928 CUST_21677_PI390587928	ABC01965 ABC01966 ABC01968 ABC01972 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK361796	1608	5e-85	1257 - 1605	83	315 / 379	None	ABC01481 ABC01482 ABC01971 ABC01972 ABC01976 ABC01977 ABC32938 ABC41020 ABC42385 ABC43517
AK359213	1450	4e-71	823 - 992	95	162 / 170	CUST_29317_PI390587928 CUST_29100_PI390587928 CUST_29315_PI390587928	ABC01964 ABC01965 ABC43517 ABC49788
MLOC_21803.4	1021	4e-71	410 - 579	95	162 / 170	None	ABC01964 ABC01965 ABC43517
MLOC_21803.3	1136	4e-71	433 - 602	95	162 / 170	None	ABC01964 ABC01965 ABC43517 ABC49788
MLOC_21803.2	1296	4e-71	450 - 619	95	162 / 170	None	ABC01964 ABC01965 ABC43517 ABC49788
AK252912.1	2576	1e-66	2388 - 2573	92	172 / 187	CUST_5116_PI390587928 CUST_23105_PI390587928	ABC01965 ABC01966 ABC01968 ABC01971 ABC01977 ABC02389 ABC09455 ABC11496 ABC12720 ABC24152 ABC32938 ABC38666 ABC41020 ABC43517 ABC49701
MLOC_41934.1	192	4e-56	62 - 192	97	127 / 131	None	ABC01964 ABC43517
AK356508	1305	2e-54	1113 - 1302	87	173 / 199	CUST_12846_PI390587928	ABC01971 ABC01976 ABC43517