barSeed - Barley Seed Development Database

Probe CUST_29317_PI390587928

Source Contig U35_16298

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29317_PI390587928	Hv_44K_v2	GAACAGGGTATTGCCGGATTTGCTATTGGCTTAGCAGCAATGGACAATAGAGCTATTGCT	174	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.242	0.300	0.893	2.789	1.399	1.731
Raw	11.104	21.671	57.666	295.990	50.812	67.071

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359213	1450	2e-24	489 - 548	100	60 / 60	plus	ABC01964 ABC01965 ABC43517 ABC49788
MLOC	MLOC_31678.2	189	6e-24	100 - 158	100	59 / 59	plus	None
MLOC	MLOC_31678.1	239	7e-23	138 - 194	100	57 / 57	plus	ABC01964
JLOC1	JLOC1_20781.1	157	4e-23	52 - 108	100	57 / 57	plus
Harvest21	ABC01964	1174	3e-25	175 - 234	100	60 / 60	plus	ABC01964
Harvest35	U35_16298	1053	3e-25	175 - 234	100	60 / 60	plus

Contig Sequence (1053 bp)

>U35_16298 1053 Hv_44K_v2
GGGAAGGCGGTGAACCTCTTCACCGCCGTCAACCAGGCGCTCCACATCGCGCTCGACACC
GACCCGCGCTCTTACGTCTTTGGAGAGGATGTGGGTTTCGGCGGCGTCTTCCGCTGCACG
ACGGGCCTAGCCGAACGATTCGGGAAACAGAGAGTATTCAATACGCCATTGTGTGAACAG
GGTATTGCCGGATTTGCTATTGGCTTAGCAGCAATGGACAATAGAGCTATTGCTGAAATC
CAGTTTGCAGATTATATCTTTCCAGCATTTGATCAGATTGTCAACGAAGCCGCTAAATTC
AGATACCGAAGTGGAAATGAATTTAACTGTGGAGGTTTAACAATTCGATCTCCATATGGT
GCTGTTGGACATGGTGGTCACTACCATTCACAGTCACCAGAGGCTTTCTTCTGCCATGTT
CCTGGCCTGAAGGTTGTCATACCTCGGAGTCCACGTGAGGCCAAGGGACTGTTGCTGGCC
AGCATTCGTGACCCAAACCCAGTCATCTTTTTCGAGCCAAAGTGGCTGTACCGTTTGGCT
GTTGAAGAAGTTCCTGAGGGGGACTATATGCTACCTTTATCCCAGGCGGAAGTGATCCGC
AAAGGAAGTGATATAACACTTGTTGGTTGGGGAGCTCAACTTGCAGTGTTGGCACAAGCA
TGTGAAGATGCTTCAAAGGATGGAATTTCTTGCGAGCTCATAGGTCTAAGAACGCTAATT
CCATGGGACAAGGAAACAGTCGAGGCCGCAGACCCTCGCGACAGGCGCTTCTAACCTCTG
GAAGCAGCGCTCAGCAATGGATGCAGCGATTTCTGCACCAAACCCTCCTGTGACTGGGGA
GCGGCCGCTGCAGCCTGAAGAGGTTGAAATACCTGGACATATCGCAGTGCATTAACCTTA
CAGACCTTCCGGAAGAGCTTGGTCACTTGACAAACCTAGAGAAGATCGACATGCGGGAAT
GCTCGCGGTTGAGGAGCCTCCCGAGGTCCTCCTCGTCGTTGAAAGTCCCTCGGGCACGTC
GTGTGCGATGAGGAAACGGCGATGCTGTGGAGG

Homology of Contig U35_16298 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07470.1	371	3e-160	protein\|transketolase, putative, expressed
Brachypodium v1_2	Bradi1g56150.2	309	3e-160
Arabidopsis v10	AT1G55510.1	352	1e-150	\| Symbols: BCDH BETA1 \| branched-chain alpha-keto acid decarboxylase E1 beta subunit \| chr1:20723482-20725505 FORWARD LENGTH=352