barSeed - Barley Seed Development Database

Probe ABC01965

Source Contig ABC01965

barSeed

Links

Affymetrix Source Sequence (968 bp)

>ABC01965 968
GGTTTCGGCGGCGTCTTCCGCTGCACGACACGGCTAGCCGAACGATTCGGGAAACAGAGA
GTATTCAATACGCCATTGTGTGAACAGGACAATAGAACTATTGCTGAAATCCAGTTTGCA
GATTATATCTTTCCAGCATTTGATCAGATTGTCAACGAAGCCGCTAAATTCAGATACCGA
AGTGGAAATGAATTTAACTATGGAGGTTTAACAATTCGATCTCCATATGGAGTCACCAGA
GGCTTTCTTCTGCCATGTTCCTGGCCTAAAGGTTGTCATACCTCGGAGTCCACGTGAGGC
CAAGGGACTTTTGCTGGCCAGCATTCGTGACCCAAACCCAGTCATATTTTTCGAGCCAAA
GTGGCTGTACCGTTTGTCTGTTGAAGAAGTTCCTCAGGGGGACTATATGCTTCCTTTATC
CCAGGCGGAAGTGCGTATATCTCCATCCTGCGTATTGTTTTTGTGACGAGGGAACCCAAA
AATATTTATGCAATCTTTATACTTTTGGTGATCCACAAAGGAAGTGATATAACACTTGTT
AGTTGGGGAGCTCAACTTGCAGTGCTGGAACAAGCATGTGAAGATGCTTCAAAGAGATGC
CGTCGTATGTCGTGTACAAGGGTAAGGTTCCAGGAGTCTACGACGACTGGGAGGAGTGTT
GGAGACAGGTTCACCGATTCAGCGGTAACAGTTACAAAGGGTACATCACAAGGGCGGAGG
CGGAAGTTAGATACACGCGCTATCTAGCGGGAGACAGGAGGGAGCGTTGCAGGAACCGGA
TGAAGACCAGTTTCATTGCGATTATGCTAATCGTGATGACCGCACCTCTCTTCTATATGT
GATGGTAGTTTAGATGGTCGATATATCGACTTGTAATGTGAAGACAAACTCGCTACTCGC
GGTCTCGAGACTTGTAATGTTCTAACTTTGTTCGGTATTTTAAATTTGGAGAAAAAAAAA
AAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK375665	921	4e-152	531 - 886	94	338 / 360	None	ABC01965 ABC01966 ABC01968 ABC01971 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC39062 ABC41020 ABC43517 ABC49701
AK355554	797	7e-125	434 - 776	90	323 / 359	None	ABC01965 ABC01966 ABC01968 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK250044.1	1508	1e-113	1120 - 1429	91	285 / 314	CUST_19173_PI390587928	ABC01481 ABC01962 ABC01965 ABC01966 ABC01968 ABC01971 ABC01972 ABC01977 ABC02389 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517
AK362294	1381	2e-106	1083 - 1353	92	254 / 275	CUST_64_PI415269222 CUST_10588_PI390587928	ABC01965 ABC01966 ABC01968 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC24714 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK354213	708	4e-103	425 - 674	94	238 / 254	None	ABC01965 ABC01966 ABC01968 ABC01972 ABC01977 ABC02389 ABC04148 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK251482.1	1651	2e-100	1306 - 1563	92	242 / 262	CUST_6650_PI390587928 CUST_21677_PI390587928	ABC01965 ABC01966 ABC01968 ABC01972 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK359213	1450	2e-66	530 - 673	99	142 / 144	CUST_29317_PI390587928 CUST_29315_PI390587928 CUST_29100_PI390587928	ABC01964 ABC01965 ABC43517 ABC49788
MLOC_21803.3	1136	3e-74	517 - 680	98	160 / 164	None	ABC01964 ABC01965 ABC43517 ABC49788
MLOC_21803.2	1296	3e-74	534 - 697	98	160 / 164	None	ABC01964 ABC01965 ABC43517 ABC49788
MLOC_21803.4	1021	1e-73	494 - 656	98	159 / 163	None	ABC01964 ABC01965 ABC43517
MLOC_47814.1	158	8e-70	1 - 156	97	152 / 156	None	ABC01964 ABC01965
AK252912.1	2576	2e-65	2388 - 2529	99	140 / 142	CUST_5116_PI390587928 CUST_23105_PI390587928	ABC01965 ABC01966 ABC01968 ABC01971 ABC01977 ABC02389 ABC09455 ABC11496 ABC12720 ABC24152 ABC32938 ABC38666 ABC41020 ABC43517 ABC49701