barSeed - Barley Seed Development Database

Probe ABC49701

Source Contig ABC49701

barSeed

Links

Affymetrix Source Sequence (662 bp)

>ABC49701 662
TCATAGCGGGCACTACCGGCCCACGGAGGCGAACTTCCGGGAGTTCATGAAGTATCTCAG
GAAGAGGAACGTCGATCTCACGGATGTGAAGTTGAGCCCAACAGAAGGCGAGGAGGACGA
ATGGCTGAGGAGGAGCCTCTCCCAGATGGATCTTTCTGCTGTGGTCCTTCTTCCGCTACT
TACATATGGTTTTAAGCTTGGTATAACAGGAGCCGCAATTTCTACAGTCGCATCCCATTT
TTCGCCATGTCCATGTGCCCTGTTGCTGCCACTTGTGCATCCAACAGAGTCAGGAAGGCG
AGATAGAGTATGTTGAAGGTGATGATATCGAGATGGGTGACATGGATGACATGGAAGATT
TTGAAGGCTTTGGTGATGAAGATGGTGGAAGAAGACGAGGACAGGGGTAGCAGGCAAAGG
ACGCGAATGTGATTCTCCAGGCACGGCTTCAGTAACATGCTTGGTGTCGATGATGTTGTA
CTTTAGATAATTTTGCCTGTCTTTCTCGTGATGACCGCAACTCTCTTCTATATGTGATGG
TAGTTTAGATGGTCAATATATCGACTTGTAATGTGAAGACAAACTCGCTACTCGCGGTCT
TGAGACTTGTAATGTTCTAACTTTGTTCGGTATTTTAAATTCGGAGACTAATATGATGAA
TT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK252912.1	2576	5e-135	2266 - 2544	98	273 / 279	CUST_5116_PI390587928 CUST_23105_PI390587928	ABC01965 ABC01966 ABC01968 ABC01971 ABC01977 ABC02389 ABC09455 ABC11496 ABC12720 ABC24152 ABC32938 ABC38666 ABC41020 ABC43517 ABC49701
MLOC_54253.2	250	1e-110	3 - 250	96	241 / 252	CUST_8691_PI390587928	ABC11496 ABC24152 ABC38666 ABC49701
MLOC_33625.1	1140	1e-100	878 - 1111	95	225 / 237	None	ABC10945 ABC49701
MLOC_33625.2	1724	1e-100	1462 - 1695	95	225 / 237	None	ABC10945 ABC49701
MLOC_32144.1	313	7e-94	90 - 313	94	215 / 228	None	ABC11496 ABC24152 ABC38666 ABC49701
MLOC_378.1	220	7e-94	1 - 218	95	211 / 222	CUST_8691_PI390587928	ABC11496 ABC24152 ABC38666 ABC49701
MLOC_7139.1	280	3e-92	1 - 196	98	192 / 196	None	ABC11496 ABC24152 ABC38666 ABC49701
MLOC_55682.1	625	1e-85	429 - 625	96	192 / 201	None	ABC11496 ABC24152 ABC38666 ABC49701
MLOC_54253.1	389	4e-81	198 - 389	95	186 / 196	CUST_8691_PI390587928	ABC11496 ABC11497 ABC24152 ABC38666 ABC49701
MLOC_47184.1	645	3e-67	292 - 446	97	150 / 155	None	ABC11496 ABC49701
MLOC_47185.1	469	4e-66	292 - 444	97	148 / 153	None	ABC49701
MLOC_2354.1	154	2e-65	1 - 153	96	149 / 155	None	ABC11496 ABC24152 ABC38666 ABC49701
AK355554	797	4e-61	639 - 791	94	148 / 157	None	ABC01965 ABC01966 ABC01968 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK354213	708	2e-59	543 - 695	94	147 / 157	None	ABC01965 ABC01966 ABC01968 ABC01972 ABC01977 ABC02389 ABC04148 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK251482.1	1651	3e-58	1424 - 1578	93	147 / 158	CUST_6650_PI390587928 CUST_21677_PI390587928	ABC01965 ABC01966 ABC01968 ABC01972 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
MLOC_32524.1	296	3e-58	1 - 129	98	127 / 129	None	ABC11496 ABC24152 ABC38666 ABC49701
AK375665	921	2e-55	749 - 891	94	138 / 147	None	ABC01965 ABC01966 ABC01968 ABC01971 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC39062 ABC41020 ABC43517 ABC49701
AK362294	1381	2e-54	1216 - 1368	92	145 / 158	CUST_10588_PI390587928 CUST_64_PI415269222	ABC01965 ABC01966 ABC01968 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC24714 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701