barSeed - Barley Seed Development Database

Probe ABC01966

Source Contig ABC01966

barSeed

Links

Affymetrix Source Sequence (1848 bp)

>ABC01966 1848
CCCAACTCCTCTCTCTATCTCCCCGGAGCCAAAGCTAGCCGACACCGCCTTCCGCAACCT
CGGCCTCCACAGCACCGCCGCACTAGCGACCGCCCCTCCTTCTCCCCTTGGACGCGGATC
CGCTCGAGCTGCTCACCCGTGGTCGGATGCGCGCTCCCTCCCTCCCACCCTCCTCGCGCA
GGAAACCCTAGCCGCCGGCCATGGCGACCGACGGTGCTATGGTGAGCTAGCAGCTACAGC
TAACAGCCAATGCAAGGGTTCTCCAGTGAGCTCTGCTCCTTCTCCACCAGTAGAGAAAGA
GACGGGGCCCTCCTTCTCTCGCTGCTTCGACCCTGCCAGCGCCGACGCCATTGAAGATCC
TTGTAATTAGAAAATATCGGGGAACAAAAGAAGCCGCAACACACATTCTCCGGGACAAGC
ACCAAGTACTGGGCCACAGTGGACTGGGATAAGATAAAAAATTCAGAAGTGAGAGAAACA
CGTCACGCAAGTATCATCATCTTCGCTCACAATCTCCGAAGTTTGGGATGGAGACAGATC
ACTATATATGTTAGTCGTGTTATATCAGAAATACAGGTTCAGGCCAGAGCACCGGGTAGT
CTCCTACAAAAACTTGGCGATTGTGTGTAAGATTTAATTGTTCAGATTCAGGCCAGAGCA
CCGGATGCAGTGCTCCGGCAAGCGGATATGCTGGTAAAAGTGTGCGCTGTTCATGTGTTG
TGCTGCAAAAACAGGAGAGTTCATATGATAGTTTTGTCGCACAACGGGATTCGATGCTTG
TCTTGTTGCGACCCAACCAGGCGCAGCTAACTCTAGCTGACACCGCGGATGCCGGCGCCT
CAATGGATCTTCCACGACCTCCTTGGCGAGGTGACGCCTCCTAGCCATTCTCCACCGCAC
GGACGGGATGGTCGGCCTCGGCTACAGATATCAAAGGTTGACAAATGGAAAGTATCTCGT
GAAGATAAAATTAAATTCTCTCATCGAACTATACACTTTCTGCTCCCATGGTTGAAAAAA
TTCCACCACGAGCAGATGCAAGAGAAAATTGTTGAGGCAACAATTAAAGGCATTGATGCA
TGCGAAGTGAAGGTTCCACAAGCTAATTGTGCAAAAAATGAAAGGATATTCTGTAACAAC
TGCAGAACATCTATAGTTGACTTCCACAGAAGCTGTACTAAATGTTCCTATGATCTCTGC
CTCATTTGCTGCCGGGAGCTTCGTCTTGGGCGCTGTCCTGGTGGTGGTGCTGCAAGTAAC
ACGGTCCTTACACAACCCGAGGTAGAAGGCAAGGAAGATTTGCAACAGACACGTAGTGAT
GATATTGCTGTGAGTTAAAAGATTCCTGATGGACAGAATGGCCTGTTGAGGAACAGGGCA
GTTCCTGTTGAGGATAGTGCTGCTGTTGCAAGTAGCATGGTCTTTACACAACCTGAGGTA
GAAGGCAAGGAAGATTTGCAACAGACAAGTAGTGATGATAACTCTGTGAGTCAAAAGCTT
TCTGATGGACAGAGTATAAAGGGTACACCACAAGGGCGGATGCGGAAGTTATATACGCGC
GCTATCTAGCGGGAGAGAGGAGGGAGTGTTGGAGGAACCGGATGAAGACCAGTTTCATCG
CGATTATGCTCATCGTGATGACCGCAGCTCTCTTCTATGTGATGGTAGTTTAGATGATCG
ATATCGACTTGTAATGTGAAGACAAACTTGTTACTCGCGTCCTCGAGATTTGTAATGTTC
TAACTTTGTTCGGTATTTTAAATTCGGAGACTAATATGATGAATTGTATTCGGAGACTAA
AAAAAAAAAAAAAAAGATAAATCTGCTGTTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK251482.1	1651	3e-66	316 - 456	99	141 / 142	CUST_6650_PI390587928 CUST_21677_PI390587928	ABC01965 ABC01966 ABC01968 ABC01972 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK359673	2157	5e-114	523 - 746	100	224 / 224	None	ABC01966 ABC02411 ABC02412 ABC34519
AK354213	708	1e-175	316 - 707	95	374 / 393	None	ABC01965 ABC01966 ABC01968 ABC01972 ABC01977 ABC02389 ABC04148 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK365548	2269	1e-110	521 - 744	99	222 / 224	None	ABC01966
AK355554	797	9e-122	524 - 797	96	262 / 274	None	ABC01965 ABC01966 ABC01968 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK362294	1381	1e-120	1101 - 1381	95	266 / 281	CUST_10588_PI390587928 CUST_64_PI415269222	ABC01965 ABC01966 ABC01968 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC24714 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
MLOC_46676.2	477	4e-115	235 - 472	98	234 / 238	None	ABC01966
MLOC_43189.1	616	5e-114	353 - 603	96	242 / 251	None	ABC01966
MLOC_46676.1	622	1e-110	236 - 459	99	222 / 224	None	ABC01966
AK375665	921	4e-110	634 - 906	93	256 / 275	None	ABC01965 ABC01966 ABC01968 ABC01971 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC39062 ABC41020 ABC43517 ABC49701
MLOC_50744.1	374	7e-103	1 - 223	97	217 / 223	None	ABC01966
MLOC_30651.2	547	2e-98	316 - 547	95	220 / 232	None	ABC01966
MLOC_33721.1	401	9e-97	107 - 330	96	214 / 224	None	ABC01966
MLOC_26230.1	220	3e-86	7 - 198	97	186 / 192	CUST_21677_PI390587928	ABC01966 ABC01968
AK250044.1	1508	1e-80	1220 - 1413	95	184 / 194	CUST_19173_PI390587928	ABC01481 ABC01962 ABC01965 ABC01966 ABC01968 ABC01971 ABC01972 ABC01977 ABC02389 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517
AK252912.1	2576	2e-73	2388 - 2573	94	175 / 186	CUST_5116_PI390587928 CUST_23105_PI390587928	ABC01965 ABC01966 ABC01968 ABC01971 ABC01977 ABC02389 ABC09455 ABC11496 ABC12720 ABC24152 ABC32938 ABC38666 ABC41020 ABC43517 ABC49701
MLOC_30651.1	680	6e-64	523 - 680	95	150 / 158	None	ABC01966
MLOC_72381.1	159	2e-63	15 - 159	97	141 / 145	CUST_21677_PI390587928	ABC01966 ABC01968
MLOC_32425.1	332	1e-60	20 - 156	98	134 / 137	CUST_6650_PI390587928	ABC01966
MLOC_29690.1	166	1e-60	15 - 155	97	137 / 141	None	ABC01966
MLOC_28504.1	355	1e-60	15 - 154	97	136 / 140	CUST_6650_PI390587928	ABC01966
MLOC_54401.1	865	2e-59	648 - 788	96	136 / 141	None	ABC01966
MLOC_54401.2	863	2e-59	646 - 786	96	136 / 141	None	ABC01966
MLOC_27530.1	194	9e-57	56 - 191	96	131 / 136	CUST_6650_PI390587928	ABC01966
MLOC_34945.1	131	1e-55	1 - 131	97	127 / 131	None	ABC01966 ABC01968