barSeed - Barley Seed Development Database

Probe ABC39062

Source Contig ABC39062

barSeed

Links

Affymetrix Source Sequence (662 bp)

>ABC39062 662
CCGACGCCGTCGATTCGAGCTCTCCCTGCAACTGCAAGGTACAGTACTCTGACGGAGTAC
CTTCTTCAGAGTGCAGAGGAGCAAAATTGTTCTAATCAGCAGCAGCACAACACAGTCACT
TGGATCAGCGGAAGAGGAGCATCAGCAGCACGGGCAAAGGAGCAACAACAGCTAGTTCTT
CAGGTACAATGGAAAACAAGCAAGCTTATATGTGAAAAATGAGTTAGCTAGGCTCAGAAT
TTTGAGTTGGCCCCTTTACATAAGTTTTAGATAAAGTTTCAAGGTTTCTTTAGAGTATTT
ATTTGTGTCCTTTGGATGTACGGTTTTAGAGCAACTATCAATTTAGTTTGTTGTCCCAAA
ATATGTGTTCCTGGGTACACTATTTTGATATGGGAGATTAGGCCCTGTTAGAGGTGGTAT
TAAAATAAAGTTACAACATGAAAATTTTAGAGGCTGTTCTGTAGATACTTAAAACACATA
TCACTTGTCAGGTTTCGTTCGGTATATTAAATCCTATGAAATTATCAAAGTGGGATGTAC
TATGTTGGACATAATTTTATGTTTGGACTTGGGTGAATGTAACCAGACTTATACTCTCAG
ATTTTGTCATTGTTGATGGTGTGAGGACTTATAATGTGATAAAGTAAAAAAAAAAAAAAA
AA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_26702.2	687	0.0	61 - 670	95	581 / 610	CUST_38572_PI390587928	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
MLOC_26702.1	1466	0.0	807 - 1416	95	581 / 610	CUST_38572_PI390587928	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
MLOC_25847.1	560	0.0	1 - 560	96	540 / 560	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
MLOC_61006.1	489	0.0	1 - 489	96	467 / 489	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
AK249174.1	838	0.0	353 - 836	93	457 / 493	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062 ABC41020
MLOC_8531.13	2600	0.0	2162 - 2599	95	417 / 438	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.14	1693	0.0	1255 - 1692	95	417 / 438	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.15	1710	0.0	1272 - 1709	95	417 / 438	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.6	1451	0.0	1013 - 1450	95	417 / 438	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_49405.1	792	0.0	386 - 792	96	391 / 408	None	ABC07217 ABC07219 ABC39062
MLOC_69962.1	337	3e-177	1 - 337	100	337 / 337	None	ABC07217 ABC07219 ABC07518 ABC39062
MLOC_8531.8	1449	5e-165	1082 - 1447	95	349 / 366	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.3	1595	8e-163	1234 - 1595	95	345 / 362	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.4	2718	8e-163	2357 - 2718	95	345 / 362	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.5	1542	8e-163	1181 - 1542	95	345 / 362	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_42134.1	419	5e-155	1 - 383	92	367 / 398	CUST_38599_PI390587928	ABC07217 ABC07219 ABC39062
MLOC_77765.1	280	3e-127	1 - 280	96	270 / 281	None	ABC07217 ABC07219 ABC07518 ABC39062
MLOC_3166.1	262	5e-120	5 - 262	97	250 / 258	None	ABC07217 ABC07219 ABC39062
AK375187	926	3e-102	501 - 727	96	219 / 227	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC34124 ABC39062 ABC41020
MLOC_933.1	257	1e-101	1 - 257	92	245 / 266	None	ABC07217 ABC07219 ABC07518 ABC39062
MLOC_42545.1	234	5e-100	1 - 234	95	222 / 234	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
MLOC_26113.1	382	2e-99	1 - 215	97	209 / 215	CUST_38599_PI390587928	ABC07217 ABC07219 ABC39062
MLOC_35302.1	227	9e-93	2 - 211	96	202 / 210	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
MLOC_31699.1	293	1e-90	95 - 293	97	193 / 199	CUST_38599_PI390587928	ABC07217 ABC07219 ABC39062
AK357637	1380	7e-89	970 - 1186	94	206 / 219	CUST_4907_PI390587928	ABC07217 ABC07219 ABC07518 ABC15446 ABC34124 ABC39062
MLOC_25832.1	571	3e-87	361 - 571	94	199 / 211	None	ABC07217 ABC07219 ABC09305 ABC39062
AK354227	894	1e-76	558 - 748	94	181 / 193	CUST_4907_PI390587928	ABC07217 ABC07219 ABC07518 ABC15446 ABC34124 ABC39062
MLOC_1685.1	293	9e-68	139 - 293	97	150 / 155	None	ABC07217 ABC07219 ABC15446 ABC39062 ABC41020
MLOC_26627.1	345	3e-67	54 - 251	90	180 / 199	None	ABC07217 ABC07219 ABC15446 ABC39062
MLOC_58959.1	351	4e-66	180 - 351	93	162 / 174	CUST_4907_PI390587928	ABC07217 ABC07219 ABC07518 ABC15446 ABC34124 ABC39062
AK356745	1918	3e-62	151 - 298	96	142 / 148	None	ABC07217 ABC07219 ABC10945 ABC15446 ABC39062 ABC41020
AK375665	921	1e-56	378 - 525	94	139 / 148	None	ABC01965 ABC01966 ABC01968 ABC01971 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC39062 ABC41020 ABC43517 ABC49701
MLOC_64203.1	276	1e-56	1 - 166	91	151 / 166	None	ABC07217 ABC39062
MLOC_65234.1	126	6e-55	1 - 126	98	123 / 126	None	ABC39062
MLOC_30030.1	173	7e-54	53 - 173	98	119 / 121	None	ABC39062
MLOC_58854.1	317	1e-51	1 - 126	96	121 / 126	None	ABC07217 ABC15446 ABC34124 ABC39062
MLOC_27827.1	130	4e-51	12 - 130	97	116 / 119	None	ABC39062
MLOC_24630.1	165	4e-51	53 - 165	99	112 / 113	None	ABC39062
MLOC_782.1	1409	4e-51	1282 - 1409	95	122 / 128	None	ABC15446 ABC39062