barSeed - Barley Seed Development Database

Probe ABC07219

Source Contig ABC07219

barSeed

Links

Affymetrix Source Sequence (978 bp)

>ABC07219 978
GGCCGCTGCGCCCCCGCGCCTCCCATCTTGCTTCTCAGTTCTCACTCCACTGCTGCCCTT
GTCTCGCGGTGCACGCGTCGCCGACGCCTGAGCTTCTCCTCACCGGGCCAGGTGCTGGGT
TCCTCCGCGACAGATCCATTATGTGCTAGCCAGGTCCAGATCGACGACGCCGAGGGAAAA
AATAATCCACTGCATGCCGACCGTCTCGCGGCACCGGCGCCAGAGCTCCCACCTCCCTTC
TCCTCGCCTGGATCCACAACCGAGTTCAAGCCGCGACCGAATCCATCCCGCGAGGGGTAC
CTAACCATTCTTGCAGAGTTCCTCAGGTACAATACTCTGACAGAGTACCTTCTTCAGAGT
GCAGAGGAGCAAAATTGTTCTAATCAGCAGCAGCACAACACAGCCACTTGGATCAGCACA
AGAGGAGCATCAGCAGCACGGGCACACGAGCAACAACAGCTAGTTCTTCAGGTGCAATGG
AAAATAAGCAAGCTTATATCTGAAAAATGAGTTAGCTAGGCTCAGAATTTTGAGTTGGCC
CCTTTACATAAGTTTTAGATAAAGTTTCAAGGTTTCTTTAGAGTATTTATTTGTGTCGTT
TGGATGTACGGTTTGAGAGCAGCTATCAGTTTAGTTTGCTGTGCCGAAATATATGTTCCT
GGGTACCGTATTTCGATATGGGAGATAAGGCCCTGTTAGAGGTGGTATTAAAATAAAGTT
ACAACATGAAAATTTTAGAGGCTGTTCTGTTGATACTTGAAACACATATCACTTGTCAGG
TTTCGTTCGGTATATTAAATCCTATGAAATTATCAAAGTGGGTTGTACTATGTTGGACAG
AATTTTATGTTTGGACTTGGGTGAATGTAACCAGACTTATACTTTCAGATTTTGTCATAG
TTAATGGTGTGAGGAACTTATAATGTGATAAAGTATATACGTTGTTGCACCATCTATATA
ATGTAATAAAGTATATAC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_26702.2	687	0.0	29 - 687	99	659 / 660	CUST_38572_PI390587928	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
MLOC_26702.1	1466	0.0	805 - 1459	99	654 / 656	CUST_38572_PI390587928	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
MLOC_25847.1	560	0.0	2 - 560	96	534 / 559	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
MLOC_61006.1	489	0.0	1 - 489	95	463 / 489	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
MLOC_8531.13	2600	0.0	2165 - 2600	95	414 / 436	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.14	1693	0.0	1258 - 1693	95	414 / 436	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.15	1710	0.0	1275 - 1710	95	414 / 436	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.6	1451	0.0	1016 - 1451	95	414 / 436	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
AK249174.1	838	2e-56	18 - 161	94	137 / 145	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062 ABC41020
MLOC_49405.1	792	0.0	386 - 792	96	391 / 408	None	ABC07217 ABC07219 ABC39062
MLOC_42134.1	419	2e-175	1 - 419	93	404 / 435	CUST_38599_PI390587928	ABC07217 ABC07219 ABC39062
MLOC_30816.1	1080	3e-168	728 - 1054	99	325 / 327	None	ABC07217 ABC07219
MLOC_8531.8	1449	7e-160	1085 - 1447	95	344 / 363	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.3	1595	1e-157	1237 - 1595	95	340 / 359	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.4	2718	1e-157	2360 - 2718	95	340 / 359	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.5	1542	1e-157	1184 - 1542	95	340 / 359	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_30816.3	543	3e-153	222 - 515	100	294 / 294	None	ABC07217 ABC07219
MLOC_69962.1	337	9e-149	1 - 337	95	320 / 337	None	ABC07217 ABC07219 ABC07518 ABC39062
MLOC_77765.1	280	6e-131	1 - 278	97	271 / 279	None	ABC07217 ABC07219 ABC07518 ABC39062
MLOC_3166.1	262	8e-120	5 - 262	97	250 / 258	None	ABC07217 ABC07219 ABC39062
MLOC_29303.1	289	5e-112	1 - 280	93	261 / 281	None	ABC07217 ABC07219
MLOC_26113.1	382	8e-110	1 - 258	95	245 / 259	CUST_38599_PI390587928	ABC07217 ABC07219 ABC39062
MLOC_31699.1	293	6e-106	52 - 293	95	232 / 243	CUST_38599_PI390587928	ABC07217 ABC07219 ABC39062
MLOC_29303.3	295	2e-105	1 - 286	91	262 / 287	None	ABC07217 ABC07219
MLOC_933.1	257	4e-103	1 - 257	92	246 / 266	None	ABC07217 ABC07219 ABC07518 ABC39062
MLOC_25832.1	571	5e-92	361 - 571	96	202 / 211	None	ABC07217 ABC07219 ABC09305 ABC39062
MLOC_42545.1	234	2e-91	1 - 234	93	217 / 234	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
AK375187	926	2e-90	501 - 727	93	212 / 227	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC34124 ABC39062 ABC41020
MLOC_35302.1	227	1e-83	3 - 211	94	196 / 209	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
AK357637	1380	2e-80	964 - 1186	91	205 / 225	CUST_4907_PI390587928	ABC07217 ABC07219 ABC07518 ABC15446 ABC34124 ABC39062
AK354227	894	4e-68	558 - 748	91	176 / 193	CUST_4907_PI390587928	ABC07217 ABC07219 ABC07518 ABC15446 ABC34124 ABC39062
MLOC_79141.1	250	2e-61	1 - 153	95	146 / 154	None	ABC07217 ABC07219
MLOC_31930.1	280	8e-60	131 - 280	95	143 / 151	CUST_38599_PI390587928	ABC07217 ABC07219
MLOC_58959.1	351	1e-57	180 - 351	90	157 / 174	CUST_4907_PI390587928	ABC07217 ABC07219 ABC07518 ABC15446 ABC34124 ABC39062
MLOC_1685.1	293	5e-57	137 - 293	92	145 / 157	None	ABC07217 ABC07219 ABC15446 ABC39062 ABC41020
MLOC_26627.1	345	2e-56	52 - 251	87	175 / 201	None	ABC07217 ABC07219 ABC15446 ABC39062
MLOC_29303.2	345	1e-52	1 - 137	94	130 / 138	None	ABC07217 ABC07219
AK356745	1918	5e-52	155 - 302	92	136 / 148	None	ABC07217 ABC07219 ABC10945 ABC15446 ABC39062 ABC41020