barSeed - Barley Seed Development Database

Probe ABC09305

Source Contig ABC09305

barSeed

Links

Affymetrix Source Sequence (922 bp)

>ABC09305 922
GGGTCCATCAAATCAGCAGCAGCTTGGGTGGCGGTGCAGGACACAGCCACCTTGTGATTC
TTCTTCCACTCCGATGAATCCAGTCGTTCTTCTTCCTCTCCGGCATATATGGAGAGCATA
TCTACAGAAGAGAAAAAACTCGATGGAAATCATGGTCATTACAGGCCCATAGAACTTGTT
ACGCTCCAGGGGCACCAAGAGTTGGTTGTGCAAAGCTTGTTTTTGGGTTTGTTCATTTTT
CTAAGAAAGCGTTCTTTTTTCTCTTTACAACAGATAAAAATTGGTGACTTGCTTTCTAAG
GAAGCGTTCCTTTTACTATTCATTTCATCACAGATTTGGTAGCACTTTTAGGTTGGTGCC
GTTGAACAAGCTATTAAATTTATCCTATACTGTAAGAAAAAAAAGTGAACTCTTTTTTAT
ACTGTTGTTTCTCATGGTCCGCAATGAATGTTCGCGTTGATTCTTTGCCATGTTATCTCA
TGCGTAGGACTTGAGCATCTGGAAGAGTGAACTTGTTTACAAACATGATATGTATTGCAT
CATCCCTTTGTGCAATATTTTACTATTTCCTTGATATTCAATGACACGGTTGTACCGAAG
CCGTACAAATCAATGTGAATGAGCTCTGTTATATATTACCAGTCTGTACATATTTGAATG
TGCTTTTGATGGGCGCACACATGTGCTAATTTTGTTTTTAAATTGATTACATTACTTGTG
TATCTTCTCTTTAGTTGCATCTCATTTTTACATTACATTTAGTAGGAGGTGTTGCATACT
CTATTTGGAGGAGTCTGAAGAAAATGGTTCATCTTGCTGCACAACCCATCAGATAAAGAA
AATGGTTCATCTTGCTGCACAACCCATCAGATAAAAGTATACAAGCAATGAGCGTACCAC
TCAGAGGTGCTTCTTTCTCTAC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK375687	2736	0.0	1431 - 2310	99	878 / 880	None	ABC09302 ABC09305 ABC26149 ABC37834
MLOC_26893.4	1730	0.0	294 - 1105	100	812 / 812	None	ABC09305
MLOC_26893.5	1156	0.0	294 - 1090	100	797 / 797	None	ABC09305
MLOC_26893.6	1159	0.0	294 - 1089	100	796 / 796	None	ABC09305
MLOC_26893.2	1164	0.0	294 - 1089	100	796 / 796	None	ABC09305
AK374008	4200	0.0	2396 - 3207	94	769 / 817	CUST_3405_PI390587928	ABC09305 ABC37834 ABC37835
MLOC_45622.1	1403	0.0	116 - 927	94	769 / 817	None	ABC09305
MLOC_31757.6	953	0.0	305 - 953	96	628 / 652	None	ABC09305
MLOC_31757.2	964	0.0	316 - 964	96	628 / 652	None	ABC09305
MLOC_31758.3	1177	0.0	530 - 1177	96	627 / 651	None	ABC09305
MLOC_79890.10	2041	0.0	407 - 1138	90	664 / 734	None	ABC09305
MLOC_79890.7	2623	0.0	989 - 1720	90	664 / 734	None	ABC09305
MLOC_79890.8	2498	0.0	417 - 1145	91	661 / 730	None	ABC09305
MLOC_79890.14	1240	0.0	1 - 716	90	648 / 717	None	ABC09305
MLOC_31757.4	871	0.0	317 - 871	97	538 / 557	None	ABC09305
MLOC_79890.12	1525	0.0	1 - 648	91	591 / 650	None	ABC09305
MLOC_79890.13	1972	0.0	1 - 645	91	588 / 646	None	ABC09305
MLOC_77430.1	896	0.0	386 - 896	96	491 / 511	None	ABC09305
MLOC_1844.8	440	5e-171	69 - 440	96	357 / 372	None	ABC09305
MLOC_1844.3	551	5e-171	180 - 551	96	357 / 372	None	ABC09305
MLOC_1844.4	716	2e-159	342 - 692	96	336 / 351	None	ABC09305
MLOC_47864.1	903	2e-131	220 - 724	84	440 / 526	None	ABC09305 ABC24189
MLOC_26892.1	1162	3e-79	412 - 575	99	164 / 165	None	ABC09305
MLOC_1844.9	805	4e-102	53 - 278	96	218 / 226	None	ABC09305
MLOC_1844.5	478	4e-102	180 - 405	96	218 / 226	None	ABC09305
MLOC_1843.1	877	4e-102	652 - 877	96	218 / 226	None	ABC09305 ABC37834
MLOC_1843.2	724	4e-102	499 - 724	96	218 / 226	None	ABC09305 ABC37834
MLOC_1844.7	839	2e-101	84 - 305	97	215 / 222	None	ABC09305
MLOC_1844.6	350	2e-101	49 - 270	97	215 / 222	None	ABC09305
MLOC_1844.1	630	2e-101	375 - 596	97	215 / 222	None	ABC09305 ABC37834
MLOC_551.2	429	1e-92	106 - 314	96	201 / 209	None	ABC09305
MLOC_551.4	528	3e-59	1 - 150	95	142 / 150	None	ABC09305
MLOC_551.1	273	3e-89	55 - 257	96	195 / 203	None	ABC09305
MLOC_26893.1	1086	3e-54	294 - 409	100	116 / 116	None	ABC09305
MLOC_26893.7	1105	8e-55	237 - 353	100	117 / 117	None	ABC09305
MLOC_551.3	398	3e-59	1 - 150	95	142 / 150	None	ABC09305
MLOC_26893.8	534	3e-54	237 - 352	100	116 / 116	None	ABC09305
MLOC_26893.9	419	8e-55	96 - 212	100	117 / 117	None	ABC09305
MLOC_26893.3	625	8e-55	294 - 410	100	117 / 117	None	ABC09305
MLOC_79890.2	1245	2e-65	535 - 724	91	172 / 190	None	ABC09305
MLOC_79890.9	1794	8e-65	1059 - 1247	90	171 / 189	None	ABC09305
MLOC_25832.1	571	1e-53	4 - 319	80	254 / 316	None	ABC07217 ABC07219 ABC09305 ABC39062