barSeed - Barley Seed Development Database

Probe ABC24189

Source Contig ABC24189

barSeed

Links

Affymetrix Source Sequence (480 bp)

>ABC24189 480
GCACGAGGAAGAGATCACGGTCAAAGTCTAAATGCACTCATAGGATCTGCATAGGATGTA
TCCTCTACTCCTATCTATTTATCAATAGAAATCTCTATGCTTTTCAAGTGTTGTAATTTG
CTAGAGGTTGCTCTTTTCGCCTCTGCATCACTAGCGTTGTTGCTCAAAACATGTAAGTAG
AGATCATTTGACCCATTTGAAGATCAAATTTATAATTAGATACCATTCTTGAAGATCTTC
ATGATTTAGAGTGTTAAATTTGACATGTTGATGATTTCATCTTGTAGGTTGCCACGCGGA
TGCTCTTTGGACTACGATATGGACACGAAGGCATTTCTTTTAGTGCTAAATATTACGTAC
TAATGCCCGCAAAGTATCGTTGTTTATTATATTTTCTATGGAGCTATGTATGTATGGATG
CTATGGAACTATGTGTATATATGGATGCTATGGAATTTTGGATGTAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK248932.1	1992	0.0	1529 - 1932	96	386 / 404	CUST_20419_PI390587928 CUST_35281_PI390587928 CUST_39810_PI390587928	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK365780	2319	0.0	1836 - 2239	96	386 / 404	CUST_20419_PI390587928 CUST_35281_PI390587928 CUST_39810_PI390587928	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC_61687.1	305	3e-116	76 - 305	99	229 / 230	CUST_25002_PI390587928	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC40107 ABC40947
MLOC_76694.1	253	1e-115	1 - 253	96	244 / 253	CUST_39810_PI390587928	ABC24189
MLOC_56397.1	221	1e-104	1 - 221	98	216 / 221	CUST_39810_PI390587928	ABC24189
MLOC_46117.1	342	1e-89	155 - 342	98	185 / 188	None	ABC24189
MLOC_28154.1	217	2e-88	1 - 186	98	183 / 186	CUST_39810_PI390587928	ABC24189
MLOC_1085.1	222	1e-85	1 - 214	93	200 / 214	CUST_25002_PI390587928	ABC12319 ABC15629 ABC24189 ABC38338 ABC39738 ABC40107 ABC40947 ABC47127
MLOC_46117.2	212	4e-85	33 - 212	98	177 / 180	None	ABC24189
MLOC_26040.1	303	2e-83	118 - 303	97	180 / 186	CUST_35281_PI390587928 CUST_39810_PI390587928	ABC24189
MLOC_47864.1	903	2e-82	1 - 178	98	174 / 178	None	ABC09305 ABC24189
MLOC_8883.1	287	1e-79	109 - 287	97	173 / 179	None	ABC24189
AK358152	2916	2e-78	2737 - 2916	96	173 / 180	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC_10978.1	1260	2e-78	1091 - 1260	98	166 / 170	CUST_39810_PI390587928	ABC24189 ABC40107
MLOC_35409.1	306	6e-78	1 - 167	98	164 / 167	CUST_39810_PI390587928	ABC24189
MLOC_31382.1	299	6e-78	1 - 197	93	185 / 198	CUST_25002_PI390587928	ABC12319 ABC24189 ABC38338 ABC39738 ABC40107 ABC40947
MLOC_32115.1	315	3e-76	149 - 315	98	163 / 167	CUST_39810_PI390587928	ABC24189
AK369286	838	1e-75	612 - 792	95	172 / 181	CUST_25002_PI390587928 CUST_19886_PI390587928	ABC08764 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
AK364221	2939	1e-75	2729 - 2909	95	172 / 181	CUST_42255_PI390587928 CUST_23620_PI390587928 CUST_25002_PI390587928 CUST_5468_PI390587928	ABC08511 ABC09582 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
AK371747	2557	4e-75	2332 - 2511	95	171 / 180	CUST_14103_PI390587928 CUST_25002_PI390587928 CUST_40153_PI390587928 CUST_22018_PI390587928 CUST_36710_PI390587928	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
AK365735	2167	4e-75	1942 - 2121	95	171 / 180	CUST_20419_PI390587928 CUST_28262_PI390587928 CUST_32677_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK367942	3453	4e-75	3154 - 3333	95	171 / 180	CUST_20419_PI390587928 CUST_28262_PI390587928 CUST_32677_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK363441	2640	5e-74	2414 - 2594	94	171 / 181	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC12682 ABC15629 ABC24189 ABC26165 ABC38338 ABC39103 ABC39738 ABC40107 ABC40364 ABC40947
MLOC_49655.1	208	5e-74	31 - 199	96	163 / 169	None	ABC24189
AK365586	3055	2e-68	2888 - 3055	95	159 / 168	CUST_42255_PI390587928 CUST_23620_PI390587928 CUST_25002_PI390587928 CUST_5468_PI390587928	ABC08511 ABC09582 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
AK365596	1810	3e-66	1644 - 1810	94	157 / 167	CUST_25002_PI390587928	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
MLOC_73655.1	273	2e-63	136 - 273	99	136 / 138	None	ABC24189
MLOC_49353.1	128	1e-54	4 - 128	98	122 / 125	None	ABC24189