barSeed - Barley Seed Development Database

Probe ABC04150

Source Contig ABC04150

barSeed

Links

Affymetrix Source Sequence (1504 bp)

>ABC04150 1504
GCCACGGGGTATCTCCGCTCCGCTCCATGTGAACGAGCGAACAGACGAACGATTGGACGG
AGCCAAGCAGTCCACTCCCACTCCACCTCCACCCCCAACCCGAGGCGACAAGATCCCGTC
CCCGGCGGCGGATCACGCCGCGCGCGCGCTTGCCTGCCTGCGTGAGGAGAGAAGAAAAAG
GAAGGATAAAAAGATGCGCGTCGGTTGTACTCCCTTTTTCTTCTCCTCACGCAGGAGCAC
TAGTTAGGTAGGAGATCGAGGTCTCGCCCCGCCCCCGCGCACTAAAGGCCACCGCTGCCG
CTGGGTTTCCGAGTTTGGACCGGCGCGGCGGTGGGTGGTGCCGTGCTGGCGGCGCCCTCC
CAACCTACTATCTGGCAACACCCAGACCCACCGCGTGATCCATTGCAGCGATATTCGGGC
CGCGAGGAGCAGGAGGAGGGACGAGTCCGCACTCGGCACTCTGCAGGGAGGGCGGGAGGG
CGAGACCGCGAGAAGGGGGAATCATGAGCGGAACAGGGTACACTGTGGAAGTCACTAACC
TGTCAAGCAGCGCGTCTGAAAATGATCTTCATGAGTTCTTCTCATTCTCTGGACCTATTG
AGCATATAGACCTTATCAGATCAGGAGGATATGGTTCAACTGCTTATGTGACTTTCAAGG
AACCCTATGCCTTGGAAACTGCAGTATTGTTGAGTGGGGCTACCATTGTGGATCAGCCGG
TGTGCATATCTCGTTGGGGACAGCCTGATGAGCCTAGTAATTTCTGGGACAGGCCAACTT
GGCAGGTCGAGGAGGAAATTGAATATAGGGACTACCAATCATGCCAGTTCAACGCCACTC
CACAGGAGGCTTTGACAGTGGCTCAGGACGTCGTGAAGACGATGCTGTCGAGGGGATACA
TACTGAGCAAGGACGCATTGTCCAGGGCTAGAGCTTTCGACGAGTCCCACCAGTTATCTG
GATCTGCGGCAGCAAAGGCTGCAGAGCTGAGCAGGAGGCTCGGCCTGACTGACAGAGTCA
GTGCTGGTGTTGGCGCAATCAGATCAGTGGACGAGACATACCATGTTACCGAGACGACCA
AGACCGTCGCCACTGCCACCGGAAGAACCGCGGTCAAGGTTATGAACACCATCGTGACGA
GCAGCTATTTCTCCGCAGGAGCTATGATGCTGTCCGAGGCTCTCACCCGCGCCGCCAAGG
CCGCTGAAAATCTGGCTGCTCATGGCAGGCAGAATTAAGTGGAAATAAACACCCCGTTCG
AACAGTTTGTTGTGTCGGTTATACAAAAGTCGGTTATTCAGACACCATGGTCGAACTTAA
GGTATGATATATTTATGTGCTATCTATGATACAGTATATAATAACAGTATTGTGGTAGCT
AGAGCAAACTGTCAGTTATTCAGACAACAAATGTGGTTTGAACAAGCTATGTGCAGAATT
CAGTCAAGGTGATCGTGCAGTCATGTCTCTGACTTTTCTGATACTCTAAAAAAAAAAAAA
AAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK251551.1	1420	0.0	2 - 1403	99	1401 / 1402	None	ABC04150
AK355756	1247	7e-97	1 - 193	100	193 / 193	None	ABC04150
MLOC_65661.1	1271	0.0	1 - 763	100	763 / 763	None	ABC04150
MLOC_60298.2	934	0.0	1 - 675	99	670 / 675	None	ABC04150
MLOC_60298.1	1831	1e-99	45 - 242	100	198 / 198	CUST_38918_PI390587928	ABC04150
AK365735	2167	2e-87	174 - 432	90	234 / 259	CUST_20419_PI390587928 CUST_28262_PI390587928 CUST_32677_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK367942	3453	2e-87	174 - 432	90	234 / 259	CUST_20419_PI390587928 CUST_28262_PI390587928 CUST_32677_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC_2767.3	282	1e-65	34 - 208	93	163 / 175	CUST_28262_PI390587928	ABC04150
MLOC_2767.2	733	1e-65	36 - 210	93	163 / 175	CUST_28262_PI390587928	ABC04150
MLOC_2767.1	396	1e-65	37 - 211	93	163 / 175	CUST_28262_PI390587928	ABC04150