barSeed - Barley Seed Development Database

Probe ABC40107

Source Contig ABC40107

barSeed

Links

Affymetrix Source Sequence (558 bp)

>ABC40107 558
TCACGGGCGCCACGCTCGTCTGGTTCGTCTTCGAGCGCGCCGGGTACAGCCTCGCGTCGG
TCCTCTCCAACGCCCTCCTCCTCCTCGTCATCATCCTCTTCTTTTGGGCCAAGTCTGCCT
CGCTGCTCAACAGAGCCTGCAGATTTATCTTCCCTGAGGATTCATCTTCCTTCCCCGTCA
ACAACTTAGACGTTGGAGAAGAGCTCTCCCTTCTTGCCGCTCCGTCCTCCTTGCCGACCA
GATCCGCGCTTCTCCGCTCGACGCCGGCACGTGCTGCTGTGGCATGGCTGGCTGATGCTG
CTGCGGCATGACAGTACCAGAGGTTGCCACGCGGATGCTCTTTGGACTACGATATGGACA
TGAAGGCATTTGTTTTAGTGTCAAATATTACTTACTAATGCCGGCACAGTATCGTTGTGT
ATTATATTTGCTATGGAGCTATGTATGTATGGATGCTATGGAACTATATGTATATATGGA
TGCTATGGAATTTTGGATGTATGGATGCTATAGAATTTTGATATATGGATCATGAAATTT
GTTAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK369286	838	0.0	301 - 835	97	530 / 544	CUST_25002_PI390587928 CUST_19886_PI390587928	ABC08764 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
AK367312	2059	4e-105	1805 - 2026	98	217 / 222	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC12520 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK363441	2640	2e-103	2413 - 2637	97	218 / 225	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC12682 ABC15629 ABC24189 ABC26165 ABC38338 ABC39103 ABC39738 ABC40107 ABC40364 ABC40947
AK369022	2472	7e-103	2154 - 2377	97	217 / 224	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_19886_PI390587928 CUST_26050_PI390587928	ABC08511 ABC11812 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK365780	2319	3e-101	2059 - 2282	96	216 / 224	CUST_20419_PI390587928 CUST_35281_PI390587928 CUST_39810_PI390587928	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK371747	2557	1e-100	2332 - 2554	96	215 / 223	CUST_14103_PI390587928 CUST_25002_PI390587928 CUST_40153_PI390587928 CUST_22018_PI390587928 CUST_36710_PI390587928	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
AK365735	2167	1e-100	1942 - 2164	96	215 / 223	CUST_20419_PI390587928 CUST_28262_PI390587928 CUST_32677_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK367942	3453	1e-100	3154 - 3376	96	215 / 223	CUST_20419_PI390587928 CUST_28262_PI390587928 CUST_32677_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK248932.1	1992	6e-99	1752 - 1989	94	224 / 238	CUST_20419_PI390587928 CUST_35281_PI390587928 CUST_39810_PI390587928	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC_61687.1	305	7e-98	33 - 256	96	214 / 224	CUST_25002_PI390587928	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC40107 ABC40947
MLOC_10979.1	1116	3e-97	877 - 1072	99	195 / 196	None	ABC40107
MLOC_78574.1	206	3e-96	1 - 206	98	201 / 206	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
MLOC_10978.1	1260	1e-95	888 - 1080	99	192 / 193	CUST_39810_PI390587928	ABC24189 ABC40107
MLOC_31382.1	299	6e-94	18 - 240	95	212 / 224	CUST_25002_PI390587928	ABC12319 ABC24189 ABC38338 ABC39738 ABC40107 ABC40947
MLOC_7626.1	195	2e-88	1 - 195	97	189 / 195	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK364221	2939	1e-85	2729 - 2929	95	194 / 204	CUST_42255_PI390587928 CUST_23620_PI390587928 CUST_25002_PI390587928 CUST_5468_PI390587928	ABC08511 ABC09582 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
MLOC_74548.1	244	1e-85	1 - 193	96	186 / 193	CUST_20419_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK358152	2916	4e-85	2737 - 2916	98	177 / 180	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC_1085.1	222	1e-76	34 - 222	94	179 / 190	CUST_25002_PI390587928	ABC12319 ABC15629 ABC24189 ABC38338 ABC39738 ABC40107 ABC40947 ABC47127
AK365586	3055	5e-75	2888 - 3055	97	163 / 168	CUST_42255_PI390587928 CUST_23620_PI390587928 CUST_25002_PI390587928 CUST_5468_PI390587928	ABC08511 ABC09582 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
AK368734	2735	2e-73	2559 - 2735	95	168 / 177	CUST_20419_PI390587928 CUST_15698_PI390587928 CUST_32677_PI390587928	ABC12319 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK365596	1810	8e-73	1644 - 1810	96	161 / 167	CUST_25002_PI390587928	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
MLOC_3592.1	228	3e-72	66 - 228	97	159 / 164	CUST_25002_PI390587928 CUST_25591_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
AK369950	3427	5e-70	3263 - 3427	96	159 / 166	CUST_29266_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
MLOC_23736.1	2197	6e-64	176 - 308	100	133 / 133	None	ABC08764 ABC40107
AK354190	1204	8e-58	240 - 373	97	131 / 135	CUST_25779_PI390587928	ABC08764 ABC40107
MLOC_45892.1	666	3e-57	476 - 605	98	127 / 130	None	ABC08764 ABC40107