barSeed - Barley Seed Development Database

Probe CUST_25779_PI390587928

Source Contig U35_17748

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25779_PI390587928	Hv_44K_v2	TTGAGGTTTACCATGGGTGCATCTTGTGGATAACAACGTATACTTTTCCTCGCAACATTT	874	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.892	1.118	1.376	1.413	0.543	0.501
Raw	1156.008	2286.900	2416.077	3864.527	528.336	526.002

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354190	1204	6e-24	949 - 1007	100	59 / 59	plus	ABC08764 ABC40107
MLOC	MLOC_74195.1	948	6e-24	161 - 219	100	59 / 59	minus	ABC08764
JLOC1	JLOC1_49437.1	1096	3e-24	730 - 788	100	59 / 59	plus
Harvest21	ABC08764	998	3e-25	875 - 934	100	60 / 60	plus	ABC08764
Harvest35	U35_17748	998	3e-25	875 - 934	100	60 / 60	plus

Contig Sequence (998 bp)

>U35_17748 998 Hv_44K_v2
CCCCCCCCCACCCCTCGTCCTCCCCGCCGCGCACCAAACCCTAGCCAGCCCCGCCGATCC
CAATGGCCGCCGCGCACCACCGGCCCCTCCACGCCCTCCTCGGCGGCGGCGCAGCCGCCG
ACCTGCTCCTCTGGAGGCGGAGGAACGCCTCCGCGGCGGCCGTCGCGGGCGCCACGCTCG
TCTGGTTCGTCTTCGAGCGCGCCGGGTACAGCCTCGCGTCGGTCCTCTCCAACGCCCTCC
TCCTCCTCGTCGTCATCCTCTTCTTCTGGGCCAAGTCCGCCTCGCTGCTCAACAGACCTC
TTCCACCACTGCCTAATCTAGAGGTCTCAGATGTGGTCGTTCAGAAAGCTGCAGATCGGG
CTCTTGTATGGGTAAACAAGGTGTTGGCTGTTGCCCATGACATTGCCATCAAGAGAGACA
GGACAGTTTTTATAAAGGTTATAATGGTTCTATGGGTGGTTTCATGTATTGGGATGCTCT
TCAACTTCTTTACGCTCATTTACATTGGTGCACTACTCGCTCTGTTGGTTCCCCCGGTAT
ATGAGAGGCACCAAGAGGTTATTGATGAAAAGGTTGGTTTAGCACACAGCATACTGTCAA
GGCACTTGAATACCGTCATTAGCAAGACTGGGCAACCAACTAAACAAAAGAAGGCTGAGT
AGAAGAAATATTTTGTCCCATTTGGAAGCTCTCCAGTTGTCCAGTGCAGTTGGCCTCGTC
ATCAGAGTCTCTATACGGTGATCCATCCACCGCTGAGAGTATTTCTGGATATTCAGGGCA
TAATGTTTAACTGCTGATACGTGAGTTTAGATGCACGATCTTCAATCTGAGAAATGGAAT
GATCTGTATATTGTTTCTATGAACATGAAACTTGTTGAGGTTTACCATGGGTGCATCTTG
TGGATAACAACGTATACTTTTCCTCGCAACATTTTTTTCTCTACGTGCGACGTTTAGTTT
TGCATATACGATTGCGGTCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17748 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g57420.1	200	2e-67	protein\|reticulon domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g25620.1	199	6e-69
Arabidopsis v10	None