barSeed - Barley Seed Development Database

Probe ABC40947

Source Contig ABC40947

barSeed

Links

Affymetrix Source Sequence (588 bp)

>ABC40947 588
GAGCAACCCAGTTCCAGTCGACATGGTATTGCTGAGTTGGATCTGCGAATGGTGAATTTA
CACTTTGGAAGATTGGTACACACGAGAAGCTGCTCTCTAAGCCCTTCAAAGTCTGGGACA
TGCAAGCATGTTCAACACAATATCAGTTTAATTCTCAGAGTTCTTCTATCTCTTCTCAAG
GGGGCCTTGGGCTAGGGGTTCAGGGACCAGAATTATCAATATGTGCACACGCTGGGCAAA
CAAAAAGTGACGAGCAACAAGGCTTGGCCGATGATGTTGGTGTGGAGTCTGCTGCAACAA
CTGGACCGATTAAGCACACCAATGAAGATGACACGAAGGCTCGTTGCTCGGTTGCCACGT
GGATGCTCTTTGGACTACGATATGGACATGAAGGCATTTGTTTTAGTGCCAAATATTACT
TACTAATGCCAGCAAAGTATCGTTGTGTATTATATTTGCTATGGAGCTATGTATGTATGG
ATGCTATGGAACTATATGTATATATGGATGCTATGGAATTTTGGATGTATGGATGCTATG
GAATTTTGATATATGGATCATGAAATTTGTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK367942	3453	5e-169	3012 - 3376	96	351 / 365	CUST_20419_PI390587928 CUST_28262_PI390587928 CUST_32677_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK365735	2167	2e-168	1805 - 2164	96	347 / 360	CUST_20419_PI390587928 CUST_28262_PI390587928 CUST_32677_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK367312	2059	2e-108	1805 - 2026	99	219 / 222	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC12520 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK369286	838	1e-105	613 - 835	98	218 / 223	CUST_25002_PI390587928 CUST_19886_PI390587928	ABC08764 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
AK363441	2640	1e-105	2415 - 2637	98	218 / 223	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC12682 ABC15629 ABC24189 ABC26165 ABC38338 ABC39103 ABC39738 ABC40107 ABC40364 ABC40947
AK371747	2557	6e-104	2332 - 2554	97	217 / 223	CUST_14103_PI390587928 CUST_25002_PI390587928 CUST_40153_PI390587928 CUST_22018_PI390587928 CUST_36710_PI390587928	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
AK365780	2319	6e-104	2060 - 2282	97	217 / 223	CUST_20419_PI390587928 CUST_35281_PI390587928 CUST_39810_PI390587928	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC_78574.1	206	8e-103	1 - 206	99	205 / 206	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
AK248932.1	1992	3e-102	1753 - 1990	95	227 / 239	CUST_20419_PI390587928 CUST_35281_PI390587928 CUST_39810_PI390587928	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK369022	2472	3e-102	2155 - 2377	97	216 / 223	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_19886_PI390587928 CUST_26050_PI390587928	ABC08511 ABC11812 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC_61687.1	305	1e-100	33 - 255	96	215 / 223	CUST_25002_PI390587928	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC40107 ABC40947
MLOC_31382.1	299	5e-100	19 - 240	96	215 / 223	CUST_25002_PI390587928	ABC12319 ABC24189 ABC38338 ABC39738 ABC40107 ABC40947
MLOC_31056.1	260	5e-100	63 - 260	100	198 / 198	None	ABC40947
MLOC_80376.1	225	1e-95	1 - 223	95	213 / 224	None	ABC12319 ABC40947 ABC47127
MLOC_7626.1	195	1e-91	1 - 195	98	191 / 195	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC_74548.1	244	1e-90	1 - 193	98	189 / 193	CUST_20419_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC_43230.1	1054	2e-89	34 - 255	92	206 / 223	None	ABC09815 ABC12319 ABC26165 ABC40364 ABC40947 ABC47127
AK364221	2939	3e-87	2730 - 2924	96	190 / 197	CUST_42255_PI390587928 CUST_23620_PI390587928 CUST_25002_PI390587928 CUST_5468_PI390587928	ABC08511 ABC09582 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
AK358152	2916	4e-86	2738 - 2916	99	177 / 179	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK356842	2274	4e-81	2098 - 2273	98	172 / 176	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC08511 ABC14874 ABC15629 ABC26165 ABC38338 ABC39738 ABC40364 ABC40947 ABC47127
MLOC_43230.4	1426	2e-79	476 - 682	93	192 / 207	None	ABC09815 ABC12319 ABC40947 ABC47127
MLOC_1085.1	222	8e-78	35 - 222	95	179 / 189	CUST_25002_PI390587928	ABC12319 ABC15629 ABC24189 ABC38338 ABC39738 ABC40107 ABC40947 ABC47127
AK365586	3055	4e-76	2889 - 3055	98	163 / 167	CUST_42255_PI390587928 CUST_23620_PI390587928 CUST_25002_PI390587928 CUST_5468_PI390587928	ABC08511 ABC09582 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
AK368734	2735	5e-75	2559 - 2735	95	169 / 177	CUST_20419_PI390587928 CUST_15698_PI390587928 CUST_32677_PI390587928	ABC12319 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK365596	1810	2e-74	1644 - 1810	97	162 / 167	CUST_25002_PI390587928	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
MLOC_3592.1	228	3e-72	66 - 228	97	158 / 163	CUST_25002_PI390587928 CUST_25591_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
AK369950	3427	5e-70	3263 - 3427	96	158 / 165	CUST_29266_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
AK361698	2007	1e-65	1866 - 2007	99	140 / 142	CUST_25002_PI390587928 CUST_18736_PI390587928 CUST_18712_PI390587928	ABC26165 ABC40364 ABC40947
MLOC_31056.2	242	5e-65	63 - 242	91	180 / 198	None	ABC09815 ABC40947
MLOC_71988.3	622	2e-64	238 - 383	97	142 / 146	None	ABC04533 ABC40947
MLOC_31057.1	160	2e-63	29 - 160	100	132 / 132	None	ABC40947
AK355775	1429	1e-61	1292 - 1429	98	135 / 138	CUST_20419_PI390587928 CUST_9670_PI390587928 CUST_25002_PI390587928 CUST_30575_PI390587928 CUST_26050_PI390587928	ABC08511 ABC15629 ABC38338 ABC39738 ABC40364 ABC40947 ABC47127
AK251104.1	2810	1e-61	1827 - 2015	89	184 / 207	CUST_26793_PI390587928 CUST_26791_PI390587928	ABC09815 ABC40947
MLOC_41307.1	269	1e-61	1 - 189	89	184 / 207	None	ABC09815 ABC40947
MLOC_25724.1	345	5e-55	121 - 265	94	136 / 145	None	ABC40947
MLOC_30535.1	538	3e-52	414 - 525	100	112 / 112	None	ABC40947
AK365298	3064	4e-51	1958 - 2079	97	118 / 122	CUST_26793_PI390587928 CUST_25298_PI390587928 CUST_26791_PI390587928	ABC09815 ABC40947 ABC47127