barSeed - Barley Seed Development Database

Probe ABC14874

Source Contig ABC14874

barSeed

Links

Affymetrix Source Sequence (1594 bp)

>ABC14874 1594
TGCCGCGTCGGGGGGGCTGTGGCCGGAAGTGCTAATTTGCTTCAGGATTTGGTGAAGGCT
GGTGGGTCGTTGCTGCTCATCGGCCCACCAGGGGTGGGGAAGACGACTGTCATAAGAGAA
ATTGCACGAATGCTAGCAGATGACTACGATAAGCGGGTGATGATTGTTGATACATCCAAT
GAGATAGCTGGAGATGGCGACATTCCTCACCCAGGAATAGGCAATGCCCGTAGGTTGCAA
GTGCCTAACCAAGAAATGCAGCATAAGGTGTTGATAGAAGCTGTGGAAAATCACATGCCT
CAGGCAATCGTCATTGATGAAATTGGAACTAAGCTAGAGGCTATGGCTGCTAGCACCATT
GCACAGCGGGGGATACAACTTGTTGCCTCCGCTCATGGTGTAACAATAGAGAACCTGACC
ATGAATCCTTCACTAGATATGCTTGTCGGAGGAATACAGAGCGTCACCCTTGGCGATGAA
GAAGCAAGCAGGAGAAGGGTCCAAAAAACGGTCCTAGAGCGCAAGGGCCCGTCAACATTC
GCATACGCTGTAGAGATTGTGTCAAAAACTGAGTTACGTGTCCATCGTAGTCTGGAGGCT
ACAGTAGATGCTCTGCTTGCAGGTAGAATGCCTAATGTTGAAATTCGTAAGTTGGGTTCA
ACCGGCTCAGTGCAGCAGGAAGTTTCTGTGCAGAAGGATCAATTTCGTCGTGATCCTTAC
AAAATTGTGTCTCAATTTGAAGTTGCTTCCTTAAGTAATGCAAGAACAAGCTTGGACTCT
GCATTTAATCTTGATTCTGCCAACGGACATATAGAGAACTCTAATGTGTCTGAAGCAGGC
TTCAATCTCTATGTTTATGGGATATCCGAGGAAATTGCCTTGCAAGCGATTAAACAACTG
GAGCTGGAGGACATGATTACTTTGACTTATAACATCAGTGAAGCTGATGCAGTGATTGCT
TTGCAATCGAAGCTCAAGAAGAATTCTCAGATTCAGGCTTTGTTGAAATCTGAAGATATA
CCGGTTTTCTTTGCTAAGACAAACTCCCTGGTGCAAATTACCAGGGCACTTCGCGTCCTT
GTCGATGATCACGTGGATGGGTTGATCGATGTTGAAGATAAGGTGGAAGTAAGATCATCA
GAGGAAACCGATGCTCTGGAGGAAGCAAGACTGGCAGTCGAGCAGGTAGTGATCCCGAAA
GGGGAGAGCGTGCAGCTCCTGCCCCGACCATCGACCATCATCTCCTACCAAGTGAACCTC
GTCAAAAGCTTCAACCTCAAGTGGGAAGTCACAGGCCAGGAGCCGAACGCGTGCCTACGG
ATCCTTCCGCAGTTCGCGGACAGGGAACAAGTTGCCGCCTCGGAGCAAGAGACCTCCGAG
ACCGCACCCGGGCTCACAGATTCAGATGGCAGCTCCGGTCTCACCAGGCTACCCTTCCTC
CCAGAGTAGCAAGCATATCCTGCTGAGAGTTCCTTTGCCGTGTGCCTCTTCTGTACCTAG
TAGCTGTACATTCCACTCCTTTCCTTTTTGCAGCCATTCGCCGTCGCTGGTACCCTGGTA
AACTCTCTCTCTCAACCGAAACTCCGAAAGCAAC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK366903	2174	0.0	568 - 2161	99	1593 / 1594	CUST_24506_PI390587928	ABC14874
MLOC_73778.2	1576	0.0	103 - 1576	97	1430 / 1476	CUST_16039_PI390587928	ABC14874
MLOC_73778.1	1586	0.0	103 - 1586	96	1430 / 1486	CUST_16039_PI390587928	ABC14874
MLOC_73778.3	1414	0.0	119 - 1414	98	1270 / 1296	CUST_16039_PI390587928	ABC14874
MLOC_73778.4	1410	0.0	6 - 1307	96	1249 / 1302	None	ABC14874
AK356842	2274	6e-88	1010 - 1213	96	196 / 205	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC08511 ABC14874 ABC15629 ABC26165 ABC38338 ABC39738 ABC40364 ABC40947 ABC47127
MLOC_31077.1	2460	6e-88	1253 - 1456	96	196 / 205	CUST_20419_PI390587928 CUST_26050_PI390587928	ABC14874 ABC26165 ABC38338 ABC39738 ABC40364
MLOC_31077.3	2203	1e-70	1042 - 1199	97	154 / 158	CUST_20419_PI390587928 CUST_26050_PI390587928	ABC14874 ABC26165 ABC38338 ABC39738 ABC40364
MLOC_31077.2	1362	7e-127	778 - 1045	97	261 / 268	CUST_20419_PI390587928 CUST_26050_PI390587928	ABC14874 ABC26165 ABC38338 ABC39738 ABC40364
MLOC_80817.1	614	3e-116	1 - 355	89	317 / 355	None	ABC14874
MLOC_33238.1	316	8e-107	94 - 316	98	219 / 223	None	ABC14874
MLOC_80817.2	563	1e-100	1 - 300	90	270 / 300	None	ABC14874
MLOC_49064.1	286	6e-83	95 - 286	96	184 / 192	None	ABC14874
MLOC_31077.4	1497	2e-73	1031 - 1184	99	153 / 154	CUST_20419_PI390587928 CUST_26050_PI390587928	ABC14874 ABC38338 ABC39738 ABC40364