barSeed - Barley Seed Development Database

Probe ABC15629

Source Contig ABC15629

barSeed

Links

Affymetrix Source Sequence (1515 bp)

>ABC15629 1515
AGGCAGATTCAGAGAGAGACCTCTGCTCGCCTCCGATGGATGGACCTCGCCGCCGGCCAT
GGCCTCCCCCACTCCTCCTCCTCCCCATCACAGGGTAAGAGGGTTGAATGAATAACCCTG
TCGGTCGGTCTTCGCACTGCCGGCAGCCACATCTCCCACTCTGCACTCCACACTCCCCTT
ACACAGGTCCCTAAATCCCGCCGCCTCCGCCGCCGGCCATAGCACAGCCTCGCCGTCCTC
CCTCCACCGACAAACGCCCGCCTCTTTCAGTTCCACCCCGACGACCATAGCAGCGCCATC
CCGCGGCCTCCTAACGCCGGATCTGCCGCTCCCACCCCAGCGCCGCCGGCCGCCCCGACC
CGGCGACCCCGGCTCAACTAGCCGCGCGAGCCATGGATGTGGCGACGGGGGCCATGGAAA
GCCTCCTCCCTAAGCTCGGGGAACTCCTCATGGAGGAGTACATGCTGCATGCCAGAGTCA
AGAAAGACGTCCAGCGTCTCCGCACAGAGCTGACCGTCATGTACGCCACCCTCCGCGAGG
TACGCGACGCACCGCGGGACCAGCTTGACGGGCAGGTCAAGCTTTGTGCCGACCGCATCA
GGGACCTCTCAAGTGTGATGCTGCTCTTCCAGACGGCCCTGGGGGAGGGGGACACTTGAT
TTCCTCGCCAGATCTGGATCCCAGGGACGACGTCGAGTCACTATGCAAGGCGGTGGCCTG
CGGGAAGGGGAACTGCATGGTGACAGAAGTATGTCAGAAGGATTCCAGATCCACCTTGCC
TGATCCTTGGGGAAGATCCTGGTCATGATGAAGATGCCAGTGACCAAGTGTTAGAAGACG
AACACGAAGGGATAACAACAAGAGGACCATAATTCACGTGTTCCTGTCAAGGATTAATTC
CCAGTCCCTTTTTACAGTTCATCATCCATTGCCGGGGAAGCTTTTGTCTATACTTCTATT
ATTGATTTAAATGTCCCCTATTCATCTTGCTTAATTATAATTTTTGGTCACATGACATTT
TTTCAAGTGTGATGCATACATGCAAGAAGTGTGGAATTTTAAAAGTTAGTTCCTTGCACT
AAATCTCTATTGATACACTACTAAGTGTCTTATTCCTTCAACATATGGTTATACGTCTTA
CATTCATGTATTAAGGTCCTCTCTCTTTTGTATCAGCTACCCTATATGTCCTCAACAGTG
ACATATACATGTCTCAAACTGCCATGGAGAAAGATTGAAGCATGCATACGGACTTGCTGG
ACAAGCTGTATTTTTTGGTTGCCACGCGGATGCTCTTTGGACTACGATATGGACTTGAAG
CCATTTGTTTTAGTGCCAAATATTACTTACTAATGCCCGCAAAGTATCATTGTGTATTAT
ATTTGCTATGGAGCTATGTATGTATGGATGCTATGGAACTATATGTATATATGGATGCTA
TGGAATTTTGGATGTATGGATGCTATGGAATTTTGATATATGGATCATGAAATTTGTTAA
AAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_2219.3	1462	0.0	1 - 954	100	954 / 954	CUST_39382_PI390587928 CUST_39383_PI390587928	ABC15629
MLOC_2219.2	1350	0.0	1 - 739	100	739 / 739	CUST_39383_PI390587928	ABC15629
MLOC_2219.1	1547	0.0	1 - 380	100	380 / 380	CUST_39382_PI390587928 CUST_39383_PI390587928	ABC15629
AK368073	1535	0.0	20 - 759	92	701 / 766	CUST_41662_PI390587928 CUST_206_PI415269222 CUST_24780_PI390587928 CUST_5273_PI390587928	ABC15629
MLOC_2219.4	1355	4e-154	1 - 296	100	296 / 296	CUST_39383_PI390587928	ABC15629
MLOC_27378.1	462	1e-158	86 - 462	93	356 / 381	CUST_41662_PI390587928	ABC15629
MLOC_27377.1	444	2e-152	86 - 444	94	337 / 359	CUST_41662_PI390587928	ABC15629
MLOC_33907.1	328	4e-149	38 - 328	99	290 / 291	None	ABC15629
MLOC_27377.2	572	2e-141	234 - 572	94	318 / 340	CUST_41662_PI390587928	ABC15629
AK365735	2167	3e-106	1940 - 2164	98	220 / 225	CUST_20419_PI390587928 CUST_28262_PI390587928 CUST_32677_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK367312	2059	3e-106	1805 - 2026	98	218 / 222	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC12520 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK367942	3453	3e-106	3152 - 3376	98	220 / 225	CUST_20419_PI390587928 CUST_28262_PI390587928 CUST_32677_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC_42558.1	250	3e-106	1 - 250	95	237 / 250	None	ABC15629
AK371747	2557	1e-104	2330 - 2554	97	219 / 225	CUST_14103_PI390587928 CUST_25002_PI390587928 CUST_40153_PI390587928 CUST_22018_PI390587928 CUST_36710_PI390587928	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
AK369286	838	2e-103	613 - 835	97	217 / 223	CUST_25002_PI390587928 CUST_19886_PI390587928	ABC08764 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
AK365780	2319	2e-103	2060 - 2282	97	217 / 223	CUST_20419_PI390587928 CUST_35281_PI390587928 CUST_39810_PI390587928	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK363441	2640	2e-103	2415 - 2637	97	217 / 223	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC12682 ABC15629 ABC24189 ABC26165 ABC38338 ABC39103 ABC39738 ABC40107 ABC40364 ABC40947
AK248932.1	1992	7e-102	1753 - 1990	95	227 / 239	CUST_20419_PI390587928 CUST_35281_PI390587928 CUST_39810_PI390587928	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK369022	2472	3e-100	2155 - 2377	96	215 / 223	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_19886_PI390587928 CUST_26050_PI390587928	ABC08511 ABC11812 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC_61687.1	305	2e-98	33 - 255	96	214 / 223	CUST_25002_PI390587928	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC40107 ABC40947
MLOC_78574.1	206	9e-96	1 - 206	98	201 / 206	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
MLOC_42535.1	211	2e-93	1 - 211	96	203 / 211	None	ABC15629
MLOC_7626.1	195	1e-89	1 - 195	97	190 / 195	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK364221	2939	2e-88	2730 - 2924	97	191 / 197	CUST_42255_PI390587928 CUST_23620_PI390587928 CUST_25002_PI390587928 CUST_5468_PI390587928	ABC08511 ABC09582 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
MLOC_74548.1	244	7e-87	1 - 193	97	187 / 193	CUST_20419_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK358152	2916	4e-84	2738 - 2916	98	176 / 179	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK356842	2274	5e-79	2098 - 2273	97	171 / 176	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC08511 ABC14874 ABC15629 ABC26165 ABC38338 ABC39738 ABC40364 ABC40947 ABC47127
AK365586	3055	2e-77	2889 - 3055	98	164 / 167	CUST_42255_PI390587928 CUST_23620_PI390587928 CUST_25002_PI390587928 CUST_5468_PI390587928	ABC08511 ABC09582 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
MLOC_30613.1	176	1e-75	4 - 176	97	167 / 173	None	ABC15629
MLOC_1085.1	222	1e-75	35 - 222	94	178 / 189	CUST_25002_PI390587928	ABC12319 ABC15629 ABC24189 ABC38338 ABC39738 ABC40107 ABC40947 ABC47127
AK365596	1810	4e-75	1642 - 1810	97	164 / 169	CUST_25002_PI390587928	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
MLOC_3592.1	228	4e-70	66 - 228	96	157 / 163	CUST_25002_PI390587928 CUST_25591_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
AK369950	3427	6e-68	3263 - 3427	95	157 / 165	CUST_29266_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
AK355775	1429	6e-58	1292 - 1429	96	133 / 138	CUST_20419_PI390587928 CUST_9670_PI390587928 CUST_25002_PI390587928 CUST_30575_PI390587928 CUST_26050_PI390587928	ABC08511 ABC15629 ABC38338 ABC39738 ABC40364 ABC40947 ABC47127