barSeed - Barley Seed Development Database

Probe ABC12319

Source Contig ABC12319

barSeed

Links

Affymetrix Source Sequence (1023 bp)

>ABC12319 1023
GAGGAGACGGAGGTAGCCCAATTCGATCCCCATGTCGAGCCGGCGATCGTGGTCATTGAT
CCTGGTCAGATTACCTGGCGCGCCTTGGACCTCAAGTTCCCACAGGAGGAGACCGAATCA
GACTGGAGCGACTGGAGCGACGGTGATGCCCAAGTGCTTGACGTGGAGGACAAAGATTGC
ACAGTAGTTGATGGCGGTGATGATGACGAGGAGTGCAATGGCCAAGTGCTTGACGAGGAC
AAGAATACAAACAGCAAGATAATCTGCCCAGGAAAGCTCTATCCCGCGAGCAAAGCAAAG
GAAATTGACCGGGAATGGATTCATAGGCACGCCGATCAGATGGGAGAATACTGGGACATG
TGTGATGACATTCTGGACCGGGAGGACGACGATGATACCCCCTTACCTCCTTTTCCTCTG
AAATTGCTCCCTCCCACAACAGCTCTATGCGCTCTTGATGCAAAATGCTACCACCGCGTT
TACAAGACCCACGACACTTCTACCACTCCATCAATTCTGGGATATCGCGAGCCACAAGAG
ATGCTACAGTTCTTTTCTATGAGGTTATCAAGCTCTGCGCTCTCCTATCCTGTTAGTGTG
TATGGAATATTTGCCGTTCAGGATGACTTGGACCAGCGACGCAACTATGTCTTTAACTAT
CCTAGAGATGTTGCTGTAGAGATTGTGAAGCAGACGCTGGTCAAACAAAACACTGGGCAA
ACAAAAAGTGATGAGCAACAAGGCTTGGCCGATGATGTTAGTGTGGAGTCTGCTCCAACA
ACTGGACCGATTAAGCACACCAATGAAGATGACACGAAGGCTCCTTACTCGGATGCCACG
CGGATGCTCTTTGGACTACGATATGGACATGAAGGCATTTGTTTTAGTGTCAAATATTAT
TTACTAATGCCCGCAAAGTATCGTTGTGTATTATATTTGCTATGGATCTATGTATGTATG
GATGCTATGGAATTATATGTATATATGGATGCTATGGAATTATATGTAAAAAAAAAAAAA
AAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_9063.1	2307	0.0	1457 - 2288	100	832 / 832	CUST_25299_PI390587928	ABC12319 ABC14289
MLOC_9063.3	2298	0.0	1415 - 2243	99	829 / 832	CUST_25299_PI390587928	ABC12319 ABC14289
MLOC_9063.4	1006	0.0	209 - 1006	100	798 / 798	CUST_25299_PI390587928	ABC12319
MLOC_9063.5	921	0.0	131 - 921	99	791 / 794	CUST_25299_PI390587928	ABC12319
MLOC_9063.2	2431	5e-92	1457 - 1640	100	184 / 184	CUST_25299_PI390587928	ABC12319 ABC14289
AK365735	2167	1e-128	1824 - 2112	96	276 / 289	CUST_20419_PI390587928 CUST_28262_PI390587928 CUST_32677_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK367942	3453	1e-128	3036 - 3324	96	276 / 289	CUST_20419_PI390587928 CUST_28262_PI390587928 CUST_32677_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC_43230.2	777	2e-111	44 - 332	91	263 / 289	None	ABC09815 ABC12319 ABC47127
MLOC_80376.1	225	4e-93	1 - 225	94	213 / 226	None	ABC12319 ABC40947 ABC47127
AK369286	838	2e-76	616 - 783	98	164 / 168	CUST_25002_PI390587928 CUST_19886_PI390587928	ABC08764 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
AK358152	2916	2e-76	2741 - 2908	98	164 / 168	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK367312	2059	8e-75	1807 - 1974	97	163 / 168	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC12520 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK371747	2557	4e-73	2335 - 2502	96	162 / 168	CUST_14103_PI390587928 CUST_25002_PI390587928 CUST_40153_PI390587928 CUST_22018_PI390587928 CUST_36710_PI390587928	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
AK364221	2939	4e-73	2733 - 2900	96	162 / 168	CUST_42255_PI390587928 CUST_23620_PI390587928 CUST_25002_PI390587928 CUST_5468_PI390587928	ABC08511 ABC09582 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
AK369022	2472	4e-73	2158 - 2325	96	162 / 168	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_19886_PI390587928 CUST_26050_PI390587928	ABC08511 ABC11812 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC_7626.1	195	1e-72	1 - 167	96	161 / 167	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK363441	2640	2e-71	2418 - 2585	96	161 / 168	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC12682 ABC15629 ABC24189 ABC26165 ABC38338 ABC39103 ABC39738 ABC40107 ABC40364 ABC40947
AK365586	3055	7e-71	2892 - 3055	96	158 / 164	CUST_42255_PI390587928 CUST_23620_PI390587928 CUST_25002_PI390587928 CUST_5468_PI390587928	ABC08511 ABC09582 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
AK248932.1	1992	9e-70	1756 - 1923	95	160 / 168	CUST_20419_PI390587928 CUST_35281_PI390587928 CUST_39810_PI390587928	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK365780	2319	9e-70	2063 - 2230	95	160 / 168	CUST_20419_PI390587928 CUST_35281_PI390587928 CUST_39810_PI390587928	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK365596	1810	3e-69	1647 - 1810	96	157 / 164	CUST_25002_PI390587928	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
MLOC_78574.1	206	1e-68	50 - 206	97	152 / 157	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
MLOC_3592.1	228	4e-68	67 - 228	96	155 / 162	CUST_25002_PI390587928 CUST_25591_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
AK368734	2735	2e-66	2560 - 2727	94	158 / 168	CUST_20419_PI390587928 CUST_15698_PI390587928 CUST_32677_PI390587928	ABC12319 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC_61687.1	305	2e-66	85 - 252	94	158 / 168	CUST_25002_PI390587928	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC40107 ABC40947
MLOC_31382.1	299	2e-66	30 - 188	96	153 / 160	CUST_25002_PI390587928	ABC12319 ABC24189 ABC38338 ABC39738 ABC40107 ABC40947
AK369950	3427	7e-66	3264 - 3427	95	155 / 164	CUST_29266_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
MLOC_1085.1	222	2e-65	40 - 205	94	156 / 166	CUST_25002_PI390587928	ABC12319 ABC15629 ABC24189 ABC38338 ABC39738 ABC40107 ABC40947 ABC47127
MLOC_43230.4	1426	1e-62	33 - 200	91	153 / 168	None	ABC09815 ABC12319 ABC40947 ABC47127
MLOC_43230.1	1054	1e-62	85 - 252	91	153 / 168	None	ABC09815 ABC12319 ABC26165 ABC40364 ABC40947 ABC47127
MLOC_74548.1	244	2e-56	1 - 141	95	134 / 141	CUST_20419_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127