barSeed - Barley Seed Development Database

Probe ABC12520

Source Contig ABC12520

barSeed

Links

Affymetrix Source Sequence (718 bp)

>ABC12520 718
GCCAGCCAGCCAGCCAGAGAGCGATTCGCCGCCGCCGCCGCCGCCGCCGTCAAGCCTCCA
GGGAGCGAGCCCCTCCGTCCACAAGACAGCCTCGCACCACCGGCCCCCGTCCCGCGCTCC
CTCACGGGCACCGCGTCTTCCGCGAGAACCGCGCCCGCCTAGCTAGCCAGGGTGTCCGCC
ACCGCCGGAGAGGGGAAGGGGAGGACCAGAACCAGAGCGCGATGGCCGGACGGCTCCTCG
GCCAACTCCTCGTCATGGGCGGCGCCGTCGTCGGCAGGGCCGTGGTGCAGGCCTACCGCC
AGGCCATCGTCAATGCACAGAGAACCGGAGCTGCACAGGAAGCTGTGAACGGTATTCGAA
GGGCTAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATATTGGGTATCAGTGAAAAGA
CGAGTTGGGAAGAGATCGTGCAGAAGTATGATACGATGTTTGAGAAGAACGCCAAGAGTG
GAAGCTTCTATCTCCAGTCGAAAGTACACCGGGCCAAAGAATGTCTGGAGTCTATACACC
ATGATAAGCCCGACATAATGAACTGAGATGGCCAGTGTTTCGTCCAATCTATTGATTTTG
TCATTGATGTTCTGTCCATGCTATGCTGGGTTGCTGCATCAGGTCAAATTGGTTGTAACA
GGGAGCTTGTTCCACTTTGAATCGAATAATATATATTTAACAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK367352	1065	0.0	125 - 829	100	705 / 705	CUST_23923_PI390587928	ABC12520
MLOC_54549.1	910	0.0	125 - 819	98	689 / 701	CUST_23923_PI390587928	ABC12520
AK250007.1	1031	1e-180	217 - 743	89	469 / 528	CUST_23922_PI390587928	ABC12520
MLOC_67193.1	760	4e-176	84 - 577	90	444 / 495	None	ABC12520
AK367312	2059	2e-55	880 - 1012	96	128 / 133	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC12520 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127