barSeed - Barley Seed Development Database

Probe ABC12682

Source Contig ABC12682

barSeed

Links

Affymetrix Source Sequence (1251 bp)

>ABC12682 1251
GTTCAACATCCAAATCAATAACCTCACTCAGTTCTTGCCGCAAGATCGGGTCTGTGAGTT
TGCAAAGCTCACCCCCATCCAGCTGCTAGAAGAGACAGAGAAGGCTGTGGGCGATCCCAA
CTTACCTGTTCAGCATCGCCAGCTTATAGAACGGAGCAGGGAGCTCAGGAATATTGAAGT
GGTAAACATCAATCCTTCCATGTTTTCCCTGTTCAACATCTGACAGTGTTGACAATTCTC
GCATGCACATAAAAAACATTTTAAATCGGTTGCTGCGGGTGGCGGTGCTCTGGGGTGCAA
GGGTAGCGTGGTGCACAACTCCGACTGTTGAAGACACTGCGGCACAACCACGTCGGTCTG
TGTGCAGCCCCAGTTCTTCAACACTAACCTGACCTTCCATAAGTGGGCGTTCAGAGGTTT
GGCGCCCTTGCCTATCCATTCTCTGAATCGGTTTGGTGTGGTGGAGATGTAAGTGTCTGA
TAGTCTTCAGTTTGTTAGAACAAAGGGTACGAGGTAAATACAAGATTCATTGCTTGCTGG
TTTGTTACGATATTTCACCTGATGGGAGATAAGATGAATTACTTGCTGGTTTGGTATGAT
ATTTGGCCTGACTGGAGAAAAGATGAATTACTTGCTGGTTTATCTGAGTAACTTGGTTGC
ATTAATACTAAAAACACATGTTATCTGTTTCTCCCTTGCTATTTCTATCTAGGGAAGATT
ATAGTTTGACCATGGAGTAGAAATCAAATGCTTCATATTGGAATGTTTGTTGGATAAGAA
GGTACAAAAACTAAACGGTGTTCTCATGGCTTTTCTTATTTATGTTTGGTGTTCAAGATA
CTTATGCCACCATGTAAAATATTTATCTAATAACTTCTCTCTTGTTGTGCAGCTATATCG
GAACCTCTTGATAATGCAGTAGATGAGCTTTGTAATATCTTCTACCATCTTATATGAACT
AGATACTCGCTAATTTAAATTGTTTGATCATACTCAAACGCTTGAAACACGAAGTATTCT
ATTGTAAGCTGAAAAATTGTGATGTCACATTCATGTTTCTCGAAAAACACTCTATACTGC
TATCACATTTATTTGTTTATTTTGTTGCATTTGTGTATTATAACTCAATGCTCTGTTGAT
CAGCGTGTTGGTAACTTCGCTCCCTAACACATGCCTCATCTCTGATGGCGGCGACATGGA
ACAACACTTCTGTGCGATTAGTACTGTAACTTTGTGAACTGAAATTATTAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_2646.1	1173	0.0	402 - 1173	99	771 / 772	None	ABC12682
MLOC_2646.2	1265	0.0	520 - 1265	99	745 / 746	None	ABC12682
MLOC_2646.3	1008	0.0	362 - 955	99	593 / 594	None	ABC12682
MLOC_11593.1	1265	0.0	1 - 487	99	485 / 487	CUST_2292_PI390587928 CUST_37338_PI390587928	ABC12682
MLOC_11594.1	1222	0.0	1 - 485	99	483 / 485	CUST_2292_PI390587928 CUST_37338_PI390587928	ABC12682
MLOC_11594.2	1227	0.0	1 - 485	99	483 / 485	CUST_2292_PI390587928 CUST_37338_PI390587928	ABC12682
MLOC_25226.1	420	0.0	1 - 420	96	405 / 420	None	ABC12682
MLOC_25665.3	1233	0.0	830 - 1233	96	386 / 404	CUST_2292_PI390587928 CUST_37338_PI390587928	ABC12682
MLOC_25665.5	804	9e-180	409 - 804	95	378 / 396	CUST_37338_PI390587928	ABC12682
MLOC_25665.1	1124	9e-180	729 - 1124	95	378 / 396	CUST_2292_PI390587928 CUST_37338_PI390587928	ABC12682
MLOC_25665.2	1120	9e-180	725 - 1120	95	378 / 396	CUST_2292_PI390587928 CUST_37338_PI390587928	ABC12682
MLOC_25665.4	892	7e-176	504 - 892	95	371 / 389	CUST_2292_PI390587928 CUST_37338_PI390587928	ABC12682
MLOC_8813.1	368	7e-176	1 - 368	97	357 / 368	None	ABC12682
MLOC_25665.6	864	4e-163	502 - 864	95	346 / 363	CUST_37338_PI390587928	ABC12682
MLOC_25665.7	729	4e-163	367 - 729	95	346 / 363	CUST_37338_PI390587928	ABC12682
MLOC_24259.1	835	2e-156	1 - 361	94	341 / 361	None	ABC12682
MLOC_31110.1	417	7e-146	1 - 320	96	307 / 320	None	ABC12682
MLOC_30307.2	303	9e-145	1 - 303	97	295 / 303	None	ABC12682
MLOC_40177.1	247	6e-102	1 - 247	94	232 / 247	None	ABC12682
MLOC_32704.1	214	3e-95	1 - 214	96	206 / 214	None	ABC12682
AK363441	2640	6e-82	2222 - 2418	95	187 / 197	CUST_20419_PI390587928 CUST_25002_PI390587928 CUST_25591_PI390587928 CUST_26050_PI390587928	ABC08511 ABC12319 ABC12682 ABC15629 ABC24189 ABC26165 ABC38338 ABC39103 ABC39738 ABC40107 ABC40364 ABC40947
MLOC_27961.1	799	8e-81	366 - 547	97	176 / 182	CUST_29494_PI390587928	ABC12682
MLOC_29996.2	545	6e-52	1 - 133	95	127 / 134	None	ABC12682
MLOC_24259.2	752	4e-74	84 - 278	93	181 / 195	None	ABC12682
MLOC_32628.2	467	5e-73	1 - 175	95	167 / 175	None	ABC12682
MLOC_28404.2	929	2e-72	71 - 252	94	171 / 182	None	ABC12682
MLOC_28404.1	1008	2e-72	225 - 406	94	171 / 182	None	ABC12682
MLOC_30307.1	190	6e-72	1 - 163	97	158 / 163	None	ABC12682
MLOC_29996.1	158	4e-64	1 - 158	95	150 / 158	None	ABC12682
MLOC_31110.2	272	2e-52	1 - 131	95	125 / 131	None	ABC12682