- Probe CUST_2292_PI390587928
- Source Contig U35_11457
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_2292_PI390587928 | Hv_44K_v2 | GGTGCTGATCTGAATGTATATGTTTCTGTTATAGTGTGCTCGATCTAATGATGTATCTTA | 565 | GeneList: turquoise MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.227 | 1.244 | 1.252 | 0.980 | 0.318 | 0.635 |
Raw | 103.399 | 161.487 | 147.020 | 192.822 | 20.038 | 44.539 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_11594.1 | 1222 | 2e-24 | 1008 - 1067 | 100 | 60 / 60 | plus | ABC12682 |
MLOC | MLOC_11593.1 | 1265 | 2e-24 | 1121 - 1180 | 100 | 60 / 60 | plus | ABC12682 |
MLOC | MLOC_11594.2 | 1227 | 2e-24 | 1013 - 1072 | 100 | 60 / 60 | plus | ABC12682 |
MLOC | MLOC_25665.3 | 1233 | 3e-21 | 154 - 210 | 98 | 56 / 57 | minus | ABC12682 |
MLOC | MLOC_25665.1 | 1124 | 3e-21 | 155 - 211 | 98 | 56 / 57 | minus | ABC12682 |
MLOC | MLOC_25665.4 | 892 | 3e-21 | 53 - 109 | 98 | 56 / 57 | minus | ABC12682 |
MLOC | MLOC_25665.2 | 1120 | 3e-21 | 155 - 211 | 98 | 56 / 57 | minus | ABC12682 |
JLOC1 | JLOC1_7689.2 | 1194 | 8e-25 | 1011 - 1070 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_7689.1 | 1189 | 8e-25 | 1006 - 1065 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_17498.3 | 1004 | 2e-21 | 794 - 850 | 98 | 56 / 57 | plus | |
JLOC1 | JLOC1_17498.2 | 1015 | 2e-21 | 805 - 861 | 98 | 56 / 57 | plus | |
JLOC1 | JLOC1_17498.1 | 1007 | 2e-21 | 797 - 853 | 98 | 56 / 57 | plus | |
Harvest21 | ABC29054 | 627 | 3e-25 | 566 - 625 | 100 | 60 / 60 | plus | |
Harvest35 | U35_11457 | 627 | 3e-25 | 566 - 625 | 100 | 60 / 60 | plus |
Contig Sequence (627 bp)
>U35_11457 627 Hv_44K_v2 GCGATTAGTACTGTAACTTTGTGAACTGAAATTATTATAACCAGTGTTACAAATGTTTGC CGAGGAAAAGTCCTTCCAGCAAAAGAAGATCCGGAGGCAGGTTTCCTATCTTGACCAGTA TTTCCTTTTGTTCCTAATTGTTGGCTCTTTCCTATGGAAGCTCTGGAAAAAAATGAAGTG TCCTAAAATTAAGGACTAATGCTTTTGACATCTGATTTGAGAAAACTGATTTACAAAATA TAACTAGAAGGCAGATTGTAGCATTCATCATTGCTATCTTATACAAAGACAGTTGGCGTC TAGAGTGACGCCGTCGACGAGCAAGTCGGCGTCTGTGAAGCTTCGCTGGAGCCATTCCAG CTCTTCCAGAGTCATAAGGAGAGCCTGAAGTCAGGCGAAGCTGTGGAGCCAGGACACCAA CGGTGCTAAGCCATTTTCCATCGAGAGGACAATGGCTGCCATCAGGGACCTCCAGACCAA GCTCAAGATTTCCCTCGCCTCCGTTGATGCCGTGTTTCAAGAGGGTTATCACCATCCACG ACGGCGAGCTAATGCGGTAGCTCGTGGTGCTGATCTGAATGTATATGTTTCTGTTATAGT GTGCTCGATCTAATGATGTATCTTATG
Homology of Contig U35_11457 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |