barSeed - Barley Seed Development Database

Probe ABC09815

Source Contig ABC09815

barSeed

Links

Affymetrix Source Sequence (1477 bp)

>ABC09815 1477
ATGCAGTTAGCTCTGATTCTAGTAACACAAGTGAAAGTGCAGTTCTTGGAGGAAGGGTAT
TTTCTCCTCCTGTTCCTGGGGCTCAGTGGAGGGCTCAAGCTCCTGCTGGTTTCCAAAATC
AAAGTGAAACTGGTCAATTTCGTGGAAGACCTGAGGTAACCGACCAAAGGGAGAAGTACT
TGCAAAGATTGCAACAAGTACAGCAGCAGCAGGGCAACCTTCTTAACGCTTCTCATATAA
CGGGCATCAATCAGAAGCAATTTCCAACCCAGCAGCCCAATTCCCTCTTACAGCAGTTTA
ATTCTCAGAGTTCTTCTATCTCTTCTCAAGGGGGCCTTGGGCTAGGGGTTCAGGGACCAG
ACGCTGGGCAAACAAAAAGTGACGAGCAACAAGGCTTGGCCGATGATGCTGGTGTGGAGT
CTGCTGCAACAACTGGGCCGATTAAGCACACCAATGAAGATGACACGAAGGCTCCTTACT
CTAATCCTCCAGCATCCATAGCAGAAGGCACCCAGCTATCTAGAGACACTGATCTATCAC
CCGGGCAGCCTATGCAACCTGGCATGCCATCATCTGGTGTTGGTGTTATTGGCCGGAGGA
GTGTATCTGATTTTGGAGCAATTGGAGACAATCTCAGTGGAGCTTCGGTAGTTTCTGGTC
ACGATCACCTTTATAATTTGCAAATGCTCGAAGCTGCATACCACAGGCTTCCACAGCCTA
AGGACTCTGAGCGTGCGAAAACTTATATTCCGAGGCACCCTTCAGTGACCCCTGCCAGTT
ACCCACAGATTCAGGCACCAATTGTGACAAATCCTGCCTTTTGGGAAAGGCTCGGTAGCG
ATACATTATCTACAGATATGCTATTCTTTGCATTCTACTATCAGCAGAACTCGTACCAAC
AATATTTGGCCGCTAAAGAACTAAAAAAGCAGTCATGGAGATTTCACAGGAAGTACAATA
CTTGGTTCCAACGGCATGTGGAGCCACAGGTCACGACGGATGAGTATGAGCGGGGATCGT
ACGTGTACTTTGATTTTCATCTCGCAGATGATGGAAATGGGTGGTGCCAAAGGATCAAGA
ACGACTTCACATTTGAATACAACTTCCTTGAGGATGAACTGTCAGTACAACCAAACTAGG
GCACTAGGGCTGAGAAAAATGTTTGCTCAATTGCGACTCGTGTAATTTTCAGAATGGAAC
TGTTGGAATCTGGAACAAATTCCCCAGTTGTAAGTTGTAACCTTGTGGGTGAATTTAAAT
TTAGAGCTGTTGTGTGCATTACTGGTCCTAGCCCTCAGTCTGAACCTTAAGCTGAACTAG
ATCCAGAAGCCCTCAGTCTGAACCTTAAGCTGAATTAGATCCAGATTTCCTAGAAACTGG
GAACTGGGCATGCCCCATGAATTTGATGATACATTCAAATAAATGGACTTGATGCAACAT
TGAAATAAAGTGAATAATCTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK251104.1	2810	0.0	1531 - 2810	99	1268 / 1280	CUST_26793_PI390587928 CUST_26791_PI390587928	ABC09815 ABC40947
AK365298	3064	3e-175	1535 - 1897	98	354 / 363	CUST_26793_PI390587928 CUST_25298_PI390587928 CUST_26791_PI390587928	ABC09815 ABC40947 ABC47127
MLOC_66548.1	1323	0.0	579 - 1323	99	743 / 745	None	ABC09815
AK365735	2167	4e-55	1817 - 1940	98	122 / 124	CUST_20419_PI390587928 CUST_28262_PI390587928 CUST_32677_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
AK367942	3453	4e-55	3029 - 3152	98	122 / 124	CUST_20419_PI390587928 CUST_28262_PI390587928 CUST_32677_PI390587928 CUST_25002_PI390587928 CUST_26050_PI390587928	ABC04150 ABC08511 ABC09815 ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC_43230.1	1054	3e-105	809 - 1037	97	222 / 229	None	ABC09815 ABC12319 ABC26165 ABC40364 ABC40947 ABC47127
MLOC_58622.1	185	2e-87	7 - 185	99	178 / 179	None	ABC09815
MLOC_31056.2	242	2e-83	62 - 242	98	177 / 181	None	ABC09815 ABC40947
MLOC_41307.1	269	3e-81	1 - 186	96	179 / 186	None	ABC09815 ABC40947
MLOC_41709.3	653	4e-79	3 - 169	99	165 / 167	None	ABC09815
MLOC_52810.1	676	2e-78	488 - 676	95	180 / 189	None	ABC09815
MLOC_41709.2	442	2e-78	3 - 168	99	164 / 166	None	ABC09815
MLOC_41709.1	268	6e-78	5 - 169	99	163 / 165	None	ABC09815
MLOC_43230.3	1134	1e-74	690 - 854	98	161 / 165	None	ABC09815 ABC47127
MLOC_43230.4	1426	1e-74	982 - 1146	98	161 / 165	None	ABC09815 ABC12319 ABC40947 ABC47127
MLOC_43229.1	1030	1e-74	581 - 745	98	161 / 165	None	ABC09815 ABC47127
MLOC_43230.5	1393	4e-74	461 - 648	94	176 / 188	None	ABC09815 ABC47127
MLOC_43230.6	750	1e-74	569 - 733	98	161 / 165	None	ABC09815 ABC47127
MLOC_43229.2	690	4e-74	26 - 213	94	176 / 188	None	ABC09815 ABC47127
MLOC_43230.2	777	1e-74	336 - 500	98	161 / 165	None	ABC09815 ABC12319 ABC47127
MLOC_28220.1	411	1e-74	106 - 270	98	161 / 165	None	ABC09815