barSeed - Barley Seed Development Database

Probe CUST_39383_PI390587928

Source Contig U35_7464

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39383_PI390587928	Hv_44K_v2	CAGTTCATCATCCATTGCCGGGGAAGCTTTTGTCTATACTTCTATTATTGATTTAAATGT	914	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.273	1.814	2.652	1.744	0.518	0.588
Raw	22.127	50.218	63.722	70.505	5.741	8.067

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2219.4	1355	2e-24	591 - 650	100	60 / 60	plus	ABC15629
MLOC	MLOC_2219.2	1350	2e-24	590 - 649	100	60 / 60	plus	ABC15629
MLOC	MLOC_2219.3	1462	2e-24	590 - 649	100	60 / 60	plus	ABC15629
MLOC	MLOC_2219.1	1547	2e-24	675 - 734	100	60 / 60	plus	ABC15629
JLOC1	JLOC1_1327.1	1374	8e-25	613 - 672	100	60 / 60	plus
Harvest21	ABC15629	1515	3e-25	915 - 974	100	60 / 60	plus	ABC15629
Harvest21	ABC27906	684	1e-23	450 - 509	98	59 / 60	plus
Harvest35	U35_7464	974	3e-25	915 - 974	100	60 / 60	plus
Harvest35	U35_7465	1045	1e-23	445 - 504	98	59 / 60	plus

Contig Sequence (974 bp)

>U35_7464 974 Hv_44K_v2
AGGCAGATTCAGAGAGAGACCTCTGCTCGCCTCCGATGGATGGACCTCGCCGCCGGCCAT
GGCCTCCCCCACTCCTCCTCCTCCCCATCACAGGGTAAGAGGGTTGAATGAATAACCCTG
TCGGTCGGTCTTCGCACTGCCGGCAGCCACATCTCCCACTCTGCACTCCACACTCCCCTT
ACACAGGTCCCTAAATCCCGCCGCCTCCGCCGCCGGCCATAGCACAGCCTCGCCGTCCTC
CCTCCACCGACAAACGCCCGCCTCTTTCAGTTCCACCCCGACGACCATAGCAGCGCCATC
CCGCGGCCTCCTAACGCCGGATCTGCCGCTCCCACCCCAGCGCCGCCGGCCGCCCCGACC
CGGCGACCCCGGCTCAACTAGCCGCGCGAGCCATGGATGTGGCGACGGGGGCCATGGAAA
GCCTCCTCCCTAAGCTCGGGGAACTCCTCATGGAGGAGTACATGCTGCATGCCAGAGTCA
AGAAAGACGTCCAGCGTCTCCGCACAGAGCTGACCGTCATGTACGCCACCCTCCGCGAGG
TACGCGACGCACCGCGGGACCAGCTTGACGGGCAGGTCAAGCTTTGTGCCGACCGCATCA
GGGACCTCTCAAGTGTGATGCTGCTCTTCCAGACGGCCCTGGGGGAGGGGGACACTTGAT
TTCCTCGCCAGATCTGGATCCCAGGGACGACGTCGAGTCACTATGCAAGGCGGTGGCCTG
CGGGAAGGGGAACTGCATGGTGACAGAAGTATGTCAGAAGGATTCCAGATCCACCTTGCC
TGATCCTTGGGGAAGATCCTGGTCATGATGAAGATGCCAGTGACCAAGTGTTAGAAGACG
AACACGAAGGGATAACAACAAGAGGACCATAATTCACGTGTTCCTGTCAAGGATTAATTC
CCAGTCCCTTTTTACAGTTCATCATCCATTGCCGGGGAAGCTTTTGTCTATACTTCTATT
ATTGATTTAAATGT

Homology of Contig U35_7464 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None