- Probe CUST_18736_PI390587928
- Source Contig U35_8588
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18736_PI390587928 | Hv_44K_v2 | GTCGATGTCAATCAGCTACTTCAGACGAATACGATTTGGTACTGCCACTGAATATATCAC | 896 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.155 | 0.863 | 1.583 | 1.616 | 0.559 | 0.471 |
| Raw | 17.040 | 20.349 | 31.780 | 50.444 | 5.276 | 5.318 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361698 | 2007 | 2e-24 | 1070 - 1129 | 100 | 60 / 60 | plus | ABC26165 ABC40364 ABC40947 |
| MLOC | AK369415 | 4110 | 6e-24 | 663 - 721 | 100 | 59 / 59 | plus | None |
| MLOC | MLOC_44399.1 | 1267 | 6e-24 | 816 - 874 | 100 | 59 / 59 | plus | None |
| MLOC | MLOC_44399.4 | 644 | 6e-24 | 209 - 267 | 100 | 59 / 59 | plus | None |
| MLOC | MLOC_44399.2 | 1396 | 6e-24 | 1116 - 1174 | 100 | 59 / 59 | plus | None |
| MLOC | MLOC_44399.3 | 832 | 6e-24 | 557 - 615 | 100 | 59 / 59 | plus | None |
| JLOC1 | JLOC1_28777.1 | 1583 | 3e-24 | 1307 - 1365 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_28778.1 | 1412 | 3e-24 | 376 - 434 | 100 | 59 / 59 | minus | |
| Harvest21 | ABC18205 | 829 | 3e-25 | 770 - 829 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_8588 | 956 | 3e-25 | 897 - 956 | 100 | 60 / 60 | plus |
Contig Sequence (956 bp)
>U35_8588 956 Hv_44K_v2 GGACAGTTCTGACTTCTCCCGCAGTCTTCTCTCCCTCCTCTTCGCTGCCGCAAGCGGCCG GCGGATCAGCCAAGCGAGCTAGCGAAGCGAAGCAAGGCCCGGCGGATGGGGCCGCCTCGC GGTCGCCTGGCCCTCCTCCTCCTCGCGCTGTCGGCGGCGCTCGCCCCCGGCCGCGCGGCC GCCACCGGCGTCTTCGAGGTGCGTCGCAAGTTCCCGCGCCACGACGGGAGCGGCAAGCAC CTGGCGAACCTCCGGGCGCATGACGCTCGCCGCCACGGCCGCTCCCTTGCCGCCGCCGTC GACCTGCCCCTCGGCGGCAATGCCCTCCCCTACGAGACCGGGCTCTACTTCACGCAGATT GGGATTGGCACACCGGCCAAGAGCTACTACGTGCAGGTGGACACCAGCAGCGATATATTC TGGGTCAACTGCGTCTTCTGCGACACCTGCCCCCGCAAGAGCGGCCTCGGGGTACTCCCA TCTCTTCCGTTTCCCCTGCAATTGCTCTGCTCTGCGGATTTGATCCACCGTGGCCGCGGG GGAGGACATAGTGCAGCACCTCTCGTCCAACTCCAACCCGTCCTCGTCCAAGCTCGCCAA GATCGAGGCGCGCATGGCCGGCAAGGCCGTCTGGGTGCCGCCCCCGTCGCCACCGCACCA CCCAGACTACCAAATAAAGTCACCCAGTGGTTTGGGCTCCATATCGGTGTCAGTTTCTGG GAGGCGGTGAACTTGACAAATATGCATCCATCAAGCACCATATGGAAGGAAGTGCTCACC GTTGCTCAAGGCGACTCCATGTCAGTCTGTGTGATAAACTTCGGTACACGGACTCCGTTC GTGTCTTCATTGGAGCTGAGGCCACTGCAAGATGCGATGTACCCTTTTGTGAATTCGTCG ATGTCAATCAGCTACTTCAGACGAATACGATTTGGTACTGCCACTGAATATATCAC
Homology of Contig U35_8588 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |