barSeed - Barley Seed Development Database

Probe ABC07217

Source Contig ABC07217

barSeed

Links

Affymetrix Source Sequence (870 bp)

>ABC07217 870
CAGCACGCGTCGCCGACGCCTGAGCTTCTCCTCGCCAGGCCAGGTGCTGGGTTCCTCCGC
GGCAGATCCATTATGTGCTAGCCACGTCCAGATCGACGACACCGAGGAAAAAAATAATCC
ACTCCAAAACGACCGTCTCGCGGCGCCGGCGCCAGAGCTCCCACCTCCCTTCTCCTCGCC
TGGATCCACAACCGAGTTCAAGCCGCGGCCAGATCCATCCTGCGAGGTACAGTACTCTGA
CGAAGTACCTTCTTCAGAGTGCAGAGGAGCAAAATTGTTCTAATCAGTAGCAGCATAACA
CAATCAGTTGGATCAGCGGAAGATGAGCATCAGCAGCACGGGCAGAGGAGCAGTAGTAGC
TAGTTCTTCAGGTACAATGGAAAACAAGCAAGCTTATATCTGAAAAATGAGTTAGCTAGG
CTCAGAATTTTGAGTTGGCCCCTTTACATAAGTTTTAGATAAAGATTCAAGGTTTCTTTA
GAGTATTTATTTTGCTGTACAGTTTGAGAGCATCTATCAGTTTAGTTTGCTGTCCCGAAA
TATATGTTCCTGGGTACAGTATTTTGTTATGGGAGATTAGGCCCTGTTAGAGGTGGTATT
AAAATAAAGTTACAAGATGGAAATTTTAGAGGCTGTTCTGTAGATACCTAAAACACATAT
CACTTGTCAGGTTTCGTTCGGTATATTAAATCCTATTAAATTATCAAAGTGGGATGTACT
ATGTTGGACAGAATTTTATGTTTGGACTTGGGTGAATGTAACCAAACTTATACTCTTAGA
TTTTGTCATAGTTGATGGTGTGAGGACTTATAATGTGATAAAGTATATACATTGTTGCAA
CACCTNATATAATGTNATAAAGTATATACA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK249174.1	838	0.0	219 - 836	100	618 / 618	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062 ABC41020
MLOC_26702.1	1466	0.0	807 - 1460	92	603 / 655	CUST_38572_PI390587928	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
MLOC_26702.2	687	0.0	61 - 684	92	576 / 624	CUST_38572_PI390587928	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
MLOC_25847.1	560	0.0	1 - 560	93	523 / 561	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
MLOC_61006.1	489	0.0	1 - 489	93	454 / 489	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
MLOC_8531.13	2600	0.0	2164 - 2600	93	408 / 437	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.14	1693	0.0	1257 - 1693	93	408 / 437	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.15	1710	0.0	1274 - 1710	93	408 / 437	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.6	1451	0.0	1015 - 1451	93	408 / 437	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_49405.1	792	4e-172	386 - 792	94	383 / 408	None	ABC07217 ABC07219 ABC39062
MLOC_42134.1	419	1e-156	1 - 419	91	394 / 435	CUST_38599_PI390587928	ABC07217 ABC07219 ABC39062
MLOC_8531.8	1449	2e-149	1084 - 1447	93	340 / 364	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.3	1595	4e-147	1236 - 1595	93	336 / 360	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.4	2718	4e-147	2359 - 2718	93	336 / 360	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_8531.5	1542	4e-147	1183 - 1542	93	336 / 360	None	ABC07217 ABC07219 ABC07518 ABC07519 ABC07520 ABC15446 ABC39062
MLOC_69962.1	337	5e-136	1 - 337	93	314 / 337	None	ABC07217 ABC07219 ABC07518 ABC39062
MLOC_26113.1	382	1e-127	1 - 259	98	256 / 260	CUST_38599_PI390587928	ABC07217 ABC07219 ABC39062
MLOC_933.1	257	1e-127	1 - 257	98	253 / 257	None	ABC07217 ABC07219 ABC07518 ABC39062
MLOC_77765.1	280	1e-116	1 - 280	94	264 / 280	None	ABC07217 ABC07219 ABC07518 ABC39062
MLOC_29303.1	289	1e-116	56 - 283	100	228 / 228	None	ABC07217 ABC07219
MLOC_42545.1	234	4e-112	1 - 223	99	222 / 223	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
MLOC_31699.1	293	9e-109	51 - 293	96	234 / 244	CUST_38599_PI390587928	ABC07217 ABC07219 ABC39062
MLOC_29303.3	295	3e-108	56 - 289	97	228 / 234	None	ABC07217 ABC07219
MLOC_3166.1	262	2e-100	5 - 262	93	240 / 258	None	ABC07217 ABC07219 ABC39062
AK375187	926	3e-94	500 - 727	94	215 / 228	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC34124 ABC39062 ABC41020
MLOC_30816.3	543	2e-91	219 - 446	93	213 / 228	None	ABC07217 ABC07219
MLOC_30816.1	1080	7e-90	761 - 985	93	210 / 225	None	ABC07217 ABC07219
MLOC_35302.1	227	9e-89	7 - 211	96	196 / 205	None	ABC07217 ABC07219 ABC07518 ABC15446 ABC39062
AK357637	1380	2e-80	970 - 1186	92	202 / 220	CUST_4907_PI390587928	ABC07217 ABC07219 ABC07518 ABC15446 ABC34124 ABC39062
MLOC_25832.1	571	1e-72	361 - 571	91	192 / 211	None	ABC07217 ABC07219 ABC09305 ABC39062
MLOC_29303.2	345	2e-70	195 - 339	100	145 / 145	None	ABC07217 ABC07219
AK354227	894	7e-70	558 - 748	92	178 / 194	CUST_4907_PI390587928	ABC07217 ABC07219 ABC07518 ABC15446 ABC34124 ABC39062
MLOC_79141.1	250	3e-64	1 - 154	95	148 / 155	None	ABC07217 ABC07219
MLOC_31930.1	280	1e-62	130 - 280	95	145 / 152	CUST_38599_PI390587928	ABC07217 ABC07219
MLOC_26627.1	345	2e-60	54 - 251	88	176 / 199	None	ABC07217 ABC07219 ABC15446 ABC39062
MLOC_58959.1	351	3e-59	180 - 351	91	159 / 175	CUST_4907_PI390587928	ABC07217 ABC07219 ABC07518 ABC15446 ABC34124 ABC39062
MLOC_1685.1	293	3e-59	139 - 293	94	145 / 155	None	ABC07217 ABC07219 ABC15446 ABC39062 ABC41020
MLOC_58854.1	317	7e-55	1 - 126	98	123 / 126	None	ABC07217 ABC15446 ABC34124 ABC39062
AK356745	1918	3e-53	155 - 298	93	134 / 144	None	ABC07217 ABC07219 ABC10945 ABC15446 ABC39062 ABC41020
MLOC_64203.1	276	2e-51	1 - 166	89	148 / 166	None	ABC07217 ABC39062