barSeed - Barley Seed Development Database

Probe ABC10945

Source Contig ABC10945

barSeed

Links

Affymetrix Source Sequence (1480 bp)

>ABC10945 1480
GAAATATCTCAGGAAGAGGAACGTCGATCTCACGGATGTGAAGGTTCACATGATGGCCAT
ACTTCCATAGACATGACATGTTCTGATTTTTTTTATCTTCTCCAATGCTCAGGTTGTTCT
AAAAAATTCAACTCATTAATATTATCTAATATGATAAAGTTGCTTTTCTCTTTACCGTAA
ACCGTAGAGTCGTTCAAAAAATATTTCTATTTTTTACAAAACTTTAAGAAGAGGGGATAT
ACATAACGATTATATAAATGTGCTAGGTGATTGTAGAAAATTGTGTTGAATCTTTTATGT
TACAGACAAGTACCAATTTGCTTGAGTAGTTGAAAACAAAAATAGATATTGTTCACTATG
TCTTCTTAATTTAGGCATTTTTTCAATAATATAGATGACTGCTATTGTAACTATGACGTA
TGGAAAATCTAAATAGGCATTCGATTTAGGTTTCACTACTACTTCCTGCATGTGTACACC
GATCCTTGCTGCCATGTCATTTTTCTATGTCGCTACTCTACATGGTTTTACTGATATACT
TTTCATTGCTCCATTAACCTGCGAGGCTTCAATTGCATTGATGTAGTACAAGGGAGTGCA
TGTTGTTGCTTCAGCAGTTGATTCATGTCATGGCAAGTGGGCAACATTACTAAATATATG
ACACTAACCCGCAGATGTTTTTCTCTAGGATCCTAAGTGCTAAATTTTCACATACATGTA
TTTAATAATTATAGTATTTATATATCCAAGGTTGCTAGCCCGTGCAGCTGCACGGGTGTA
CGACTAGTATTTGTAGTTGGGGGAACTTGTACTAGTTTCCCTCAACTACAAGTATTTCGG
TACAGAGGGAGTAGATCACAAGACTCATTATGCCCCATGTCTACACTACCATCAGAGTCA
GCTTGCGCTACTTCCTTATCTATATTTTGTAGCAGCAGCTTCCTGAGGTGACTTGGTATT
CTCACAAATGATTTATTGTAAATACGGACATATATCCACCTGACTCTCAAACTACTCAAA
ATGTGAAGGTGCAAGCTTGTAGTCACCTATTGCCTGTGAAGGTCAATATGATTATTAAAT
GTGTTGAAATATTGTTCAACTTCTAGTCTAAGTACATTTTGCCTGTCTATATTCTTTGCA
GGGTACTCCATCTTATGCACAGTTTATGTATGGGGATGCTGACTCCAAGTTCGCGCCATC
AGTAAAAGGAGTTGCAGCCACTGCTCATACAGCATGTTACTATGTTACCTTTTAAATCTC
CCCCCACAGAACTGATAGTTGTAGTTACATTTGCTAAAATCTGAAGCATGTGGCCTTTTC
GAATATGCATCTTTTTTTTATTCCTATTTTTTATTTGTTGGAGGACAACATGTATGTACT
CATATTTTTGGTTCATCTTTTTTTTATGTATTAATCATTTGCACGGCACATGATGCCTAA
TAATAAGAAAATAGATGTGTATTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_26475.6	1491	0.0	477 - 1491	99	1014 / 1015	None	ABC10945
MLOC_26475.3	1370	0.0	356 - 1370	99	1014 / 1015	None	ABC10945
MLOC_26475.7	1376	0.0	362 - 1376	99	1014 / 1015	None	ABC10945
MLOC_26475.5	1482	0.0	468 - 1482	99	1014 / 1015	None	ABC10945
MLOC_26475.2	1471	0.0	457 - 1471	99	1014 / 1015	None	ABC10945
MLOC_26475.8	1464	0.0	465 - 1464	99	999 / 1000	None	ABC10945
MLOC_26475.4	2430	0.0	1457 - 2430	99	973 / 974	None	ABC10945
MLOC_26475.1	2419	0.0	1446 - 2419	99	973 / 974	None	ABC10945
MLOC_33625.2	1724	0.0	1 - 879	98	861 / 879	None	ABC10945 ABC49701
MLOC_33625.1	1140	0.0	1 - 877	98	859 / 877	None	ABC10945 ABC49701
MLOC_81658.1	629	0.0	1 - 618	97	600 / 620	None	ABC10945 ABC35016
MLOC_80283.1	516	0.0	1 - 516	97	500 / 516	None	ABC10945
MLOC_68326.1	247	4e-114	2 - 247	97	239 / 246	None	ABC10945 ABC35016
MLOC_6722.1	251	2e-108	1 - 251	96	240 / 251	None	ABC10945 ABC35016
MLOC_49198.1	446	6e-98	109 - 346	94	227 / 241	None	ABC10945 ABC35016
MLOC_61857.1	330	7e-97	120 - 330	97	205 / 211	None	ABC10945 ABC35016
MLOC_81244.1	232	9e-91	30 - 232	97	196 / 203	None	ABC10945 ABC35016
MLOC_29648.1	318	2e-88	123 - 318	97	191 / 197	None	ABC10945 ABC35016
MLOC_81658.2	362	9e-86	181 - 362	98	179 / 182	None	ABC10945 ABC35016
MLOC_915.1	184	2e-82	1 - 184	97	180 / 186	None	ABC10945 ABC35016
MLOC_22074.1	346	7e-77	175 - 346	97	167 / 172	None	ABC10945 ABC35016
MLOC_25337.1	152	3e-65	1 - 151	97	146 / 151	None	ABC10945
MLOC_25056.4	2040	3e-60	817 - 964	95	141 / 148	CUST_18744_PI390587928	ABC10945
MLOC_25056.1	2140	3e-60	827 - 974	95	141 / 148	CUST_18744_PI390587928	ABC10945
MLOC_25056.3	2040	3e-60	827 - 974	95	141 / 148	CUST_18744_PI390587928	ABC10945
MLOC_25056.5	2215	3e-60	914 - 1061	95	141 / 148	CUST_18744_PI390587928	ABC10945
MLOC_59248.1	1381	1e-59	25 - 166	96	136 / 142	CUST_18608_PI390587928	ABC10945 ABC14617
AK356745	1918	6e-58	1729 - 1918	88	180 / 204	None	ABC07217 ABC07219 ABC10945 ABC15446 ABC39062 ABC41020