barSeed - Barley Seed Development Database

Probe ABC12720

Source Contig ABC12720

barSeed

Links

Affymetrix Source Sequence (843 bp)

>ABC12720 843
GCTCCCTCTCTCTATCTCGTGCGTCTCTCCCTCCCCACCCCACGAAACCCTCGCCGCCGC
TGCCTACGCCGCTCGATTCCAGCGTGTTCCGGTGGACCTCGTCGGTGCAGCGCACAGATC
CGAGCTCCCGTGCCGCCGCTCTTCCCTCCCCCCATCCAGATCCGCCTCTCGTGTCCTGGA
GAGCTCGCCCACTACTCCGGCGTGGCGCTGGCGACTCTGTTCCGCTCTCTCCAACGCCCA
CCGGAAGTCCCACGGGCGGCTCTGCCTCGTTGACGGTGCTGTTGTTTGGGTTTGGATTGA
TCTTCCCAAGGACACTGTGTTCAATTGGCATGTTCTTCTTTGGATCAATATTTCGGAAAT
CCCATGTTGAATCAGCATATGTCAGCACTTTGGAGCTTCCAGCTTTGGTGGACTAGAGGG
TACCACGAAGTCAATCTACAAGGACTACACCATGCATGCATGACATTAACACCATGTGCA
TAGAGATGTCGTCGTATGTCGTATACAAGGGTAAGGTTCCTGGAATCTACGACGACTGGA
GAGAGGTTCACCGTTTAAGCGGCAATAGTTACAAAGGGTACACCACAAGGGCGGAGGCGG
AAGTTAGATACGCGCGCTATCTAGCGGGAGAGAGGAGGGAGCGTTGGAGGAACCAGATGA
AGACCAGTTTCATCGCGATTATGCTCATCGTGATGACCGCAGCTCTCTTCTATGTGATGG
TAGTTTAGATGATCAATATCGACTTGTAATGTGAAGATAAACTCGCTACTCGCGGTCTCG
AGACTTGTAATGTTCTAACTTTGTTCGGTATTTCAAATTCGGAGACTAAAAAAAAAAAAA
AAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK355554	797	0.0	2 - 780	99	779 / 786	None	ABC01965 ABC01966 ABC01968 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
MLOC_31931.1	1000	0.0	569 - 1000	99	430 / 432	None	ABC12720
MLOC_31931.2	1163	3e-59	493 - 648	94	146 / 156	None	ABC12720
MLOC_31932.1	1541	0.0	1197 - 1541	100	345 / 345	None	ABC12720
AK375665	921	3e-133	525 - 890	91	332 / 366	None	ABC01965 ABC01966 ABC01968 ABC01971 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC39062 ABC41020 ABC43517 ABC49701
MLOC_31932.3	514	5e-61	76 - 203	100	128 / 128	None	ABC12720
MLOC_31932.2	1075	4e-97	565 - 764	99	198 / 200	None	ABC12720
AK354213	708	2e-119	425 - 684	97	251 / 260	None	ABC01965 ABC01966 ABC01968 ABC01972 ABC01977 ABC02389 ABC04148 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK362294	1381	8e-119	1081 - 1357	95	262 / 277	CUST_10588_PI390587928 CUST_64_PI415269222	ABC01965 ABC01966 ABC01968 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC24714 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
AK251482.1	1651	3e-113	1300 - 1567	94	254 / 269	CUST_6650_PI390587928 CUST_21677_PI390587928	ABC01965 ABC01966 ABC01968 ABC01972 ABC01977 ABC02389 ABC11496 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
MLOC_9087.1	271	3e-108	20 - 271	95	239 / 252	None	ABC12720
MLOC_28328.1	256	9e-99	1 - 237	94	226 / 240	None	ABC12720
AK250044.1	1508	1e-97	1120 - 1429	88	274 / 310	CUST_19173_PI390587928	ABC01481 ABC01962 ABC01965 ABC01966 ABC01968 ABC01971 ABC01972 ABC01977 ABC02389 ABC12720 ABC32938 ABC34124 ABC41020 ABC43517
MLOC_66660.4	5221	9e-84	4337 - 4536	95	190 / 200	CUST_16779_PI390587928	ABC12720 ABC48397
MLOC_66660.1	4001	9e-84	3723 - 3915	96	185 / 193	CUST_16779_PI390587928	ABC12720 ABC48397
MLOC_66660.6	5490	9e-84	3688 - 3887	95	190 / 200	CUST_16779_PI390587928	ABC12720 ABC48397
MLOC_66660.5	4879	9e-84	3936 - 4135	95	190 / 200	CUST_16779_PI390587928	ABC12720 ABC48397
MLOC_80232.1	565	5e-66	1 - 165	95	156 / 165	None	ABC12720
MLOC_42346.1	166	1e-62	18 - 166	96	143 / 149	None	ABC12720
MLOC_66661.5	889	2e-60	4 - 142	97	135 / 139	None	ABC12720
AK252912.1	2576	3e-58	2388 - 2533	95	139 / 146	CUST_5116_PI390587928 CUST_23105_PI390587928	ABC01965 ABC01966 ABC01968 ABC01971 ABC01977 ABC02389 ABC09455 ABC11496 ABC12720 ABC24152 ABC32938 ABC38666 ABC41020 ABC43517 ABC49701
MLOC_28922.1	800	3e-58	498 - 626	98	127 / 129	None	ABC12720
MLOC_66661.4	1514	1e-57	1 - 150	94	141 / 150	None	ABC12720
MLOC_66660.7	5753	1e-52	3688 - 3815	96	123 / 128	CUST_16779_PI390587928	ABC12720 ABC48397
MLOC_66660.2	4264	1e-52	3723 - 3850	96	123 / 128	CUST_16779_PI390587928	ABC12720 ABC48397
MLOC_66661.1	2479	1e-52	541 - 668	96	123 / 128	None	ABC12720
MLOC_66660.3	5795	1e-52	4337 - 4464	96	123 / 128	CUST_16779_PI390587928	ABC12720 ABC48397
MLOC_66661.2	2196	1e-52	87 - 214	96	123 / 128	None	ABC12720
MLOC_66661.3	2277	1e-52	87 - 214	96	123 / 128	None	ABC12720
MLOC_66660.8	6951	1e-52	4575 - 4702	96	123 / 128	CUST_16779_PI390587928	ABC12720 ABC48397