barSeed - Barley Seed Development Database

Probe ABC24152

Source Contig ABC24152

barSeed

Links

Affymetrix Source Sequence (998 bp)

>ABC24152 998
CCGAGCTCATTGACTCCATCCTCGACGTCGTCTGCAAGGAGGCCGAGAACCGCGACTGCC
TCCAAGGTTTCCAGGTGTGCCAATTGCTGGGCGGCGGCACGGGGTCCAACATGGGCGTGC
TGCTCATCTCCAACATCCGGGAGGAGTACCTGGACTGCATGATGCTCACCTTGTCTGTCT
TCCCCTACTGCCGCCCGCAGCCTCAGATCAGACAAGATAGTTTGTTGTTTGTTATTTTTT
GTTTTACAAGTATAATCATCTGCGTAGCTCGCGACTGACAAGACGATGATACATCCGAGT
GTATTTCCCTGTTTTGTTTCAGGATATGTTTTAGTAGGATTTTGCTTGTGTCACTAAGAG
AAGCTCTTTTCTGCCTCGTGCGGTAGCTCGGAGAGGAAGAAGAAAGAAGAGGAGCTACAT
GCTGGATGAATCTGGACCAACTCCAACCCAACCCCAGTACTTGTAGATGTTATACATACA
GTAGATGTTATATATTCAGTCATCCAATTCTGACTGTCCGCTCGAGCGGCTCGATGAGCT
TAATTTGAGGGCAAAGAACACAGTGGCGTTCGGCGAATCTGCTACAGTCCGTGTGCTTCA
TTTCACCAAGTAAAATCAAATCACACAAATTGCGATTCAAATGATATTGCCTGATTGCTC
ATCTTTGAGATGGGTGACATGGATGATATGGAATATTTTGAAGGCTTTGGTGATGAAGAT
GATGATGGAGATGAAGATTATATGGAAGAGCGAGTATCAAAGAAACCCAAGCGATCAGAC
TTTGATTCAAGTTCAAAGATTGGGCAAAAATTTAGGAAGGTTATCTCCGAGGTGGAAGAA
GACGAGGACAGGGGTAGCAGGCAAAGGACGCGAAAGTGATTCTCGAGGCACGGCTTCAGT
AACATGCTTGGTGTCGATGATGTTGTACTTTAGATAATTTTGCCTGTCTTTCTCGTGATG
ATCGCAACTCTCTTCTATGTGATGGTAGTTTAGATGAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_52211.1	567	0.0	25 - 523	100	499 / 499	None	ABC04559 ABC04560 ABC24152
MLOC_54253.1	389	7e-180	9 - 362	99	350 / 354	CUST_8691_PI390587928	ABC11496 ABC11497 ABC24152 ABC38666 ABC49701
AK248623.1	1336	8e-120	823 - 1114	93	277 / 297	CUST_8197_PI390587928	ABC11496 ABC11497 ABC24152
MLOC_48986.2	277	5e-97	24 - 250	95	216 / 227	None	ABC01510 ABC24152
MLOC_9319.4	2346	3e-94	1633 - 1853	95	211 / 222	CUST_9744_PI390587928 CUST_3619_PI390587928	ABC04557 ABC04559 ABC04560 ABC16638 ABC24152 ABC38793
MLOC_9319.3	2422	3e-94	1684 - 1904	95	211 / 222	CUST_3619_PI390587928 CUST_9744_PI390587928	ABC04557 ABC04559 ABC04560 ABC16638 ABC24152 ABC38793
MLOC_54252.1	366	8e-90	4 - 195	98	188 / 192	None	ABC24152
MLOC_54253.2	250	2e-81	59 - 223	100	165 / 165	CUST_8691_PI390587928	ABC11496 ABC24152 ABC38666 ABC49701
MLOC_48986.1	279	2e-75	52 - 223	97	166 / 172	None	ABC01510 ABC24152
MLOC_9319.2	720	8e-75	48 - 227	95	172 / 181	CUST_9744_PI390587928	ABC04557 ABC04559 ABC04560 ABC16638 ABC24152 ABC38793
MLOC_9319.1	750	8e-75	53 - 232	95	172 / 181	CUST_9744_PI390587928	ABC04557 ABC04559 ABC04560 ABC16638 ABC24152 ABC38793
MLOC_55682.1	625	1e-73	428 - 596	96	163 / 169	None	ABC11496 ABC24152 ABC38666 ABC49701
MLOC_378.1	220	1e-73	51 - 219	96	163 / 169	CUST_8691_PI390587928	ABC11496 ABC24152 ABC38666 ABC49701
MLOC_31188.1	276	4e-73	100 - 276	95	168 / 177	None	ABC24152
MLOC_32144.1	313	5e-72	89 - 257	96	162 / 169	None	ABC11496 ABC24152 ABC38666 ABC49701
AK252912.1	2576	8e-70	2265 - 2433	95	161 / 169	CUST_5116_PI390587928 CUST_23105_PI390587928	ABC01965 ABC01966 ABC01968 ABC01971 ABC01977 ABC02389 ABC09455 ABC11496 ABC12720 ABC24152 ABC32938 ABC38666 ABC41020 ABC43517 ABC49701
MLOC_7139.1	280	8e-70	29 - 197	95	161 / 169	None	ABC11496 ABC24152 ABC38666 ABC49701
AK251005.1	1730	4e-68	413 - 598	92	171 / 186	CUST_8688_PI390587928 CUST_16114_PI390587928	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC24152
MLOC_3711.1	184	6e-66	1 - 173	93	161 / 173	None	ABC24152
MLOC_2354.1	154	4e-63	1 - 153	95	146 / 153	None	ABC11496 ABC24152 ABC38666 ABC49701
MLOC_35653.1	349	1e-62	189 - 349	94	151 / 161	None	ABC01503 ABC01506 ABC01508 ABC01510 ABC01511 ABC24152
MLOC_32524.1	296	2e-55	1 - 130	97	126 / 130	None	ABC11496 ABC24152 ABC38666 ABC49701
MLOC_59698.1	1360	8e-55	1205 - 1357	92	141 / 153	CUST_16114_PI390587928	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC24152