barSeed - Barley Seed Development Database

Probe CUST_9744_PI390587928

Source Contig U35_365

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9744_PI390587928	Hv_44K_v2	AAGTACGCCCTATCGTGGTAGCTACAAGCTCCTGGTCACCTATATGCTCATCTAATTACA	893	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.295	1.221	1.164	0.836	0.226	0.317
Raw	472.120	701.997	583.667	691.776	63.612	96.257

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9319.4	2346	2e-24	1957 - 2016	100	60 / 60	plus	ABC04557 ABC04559 ABC04560 ABC16638 ABC24152 ABC38793
MLOC	MLOC_9319.2	720	2e-24	331 - 390	100	60 / 60	plus	ABC04557 ABC04559 ABC04560 ABC16638 ABC24152 ABC38793
MLOC	MLOC_9319.3	2422	2e-24	2008 - 2067	100	60 / 60	plus	ABC04557 ABC04559 ABC04560 ABC16638 ABC24152 ABC38793
MLOC	MLOC_9319.1	750	2e-24	336 - 395	100	60 / 60	plus	ABC04557 ABC04559 ABC04560 ABC16638 ABC24152 ABC38793
JLOC1	JLOC1_6094.5	1948	8e-25	1299 - 1358	100	60 / 60	plus
JLOC1	JLOC1_6094.4	2648	8e-25	1999 - 2058	100	60 / 60	plus
JLOC1	JLOC1_6094.3	1726	8e-25	1077 - 1136	100	60 / 60	plus
Harvest21	ABC04560	1523	3e-25	894 - 953	100	60 / 60	plus	ABC04560
Harvest35	U35_365	1523	3e-25	894 - 953	100	60 / 60	plus

Contig Sequence (1523 bp)

>U35_365 1523 Hv_44K_v2
GCTCGTTTGACCTAATCTAAAGAAAACCACTAGCCCCCTTCTCCCACCGCGAGCCCTCTC
TCTGTCCCCCTCCCACGACTCCTCTGCCGCCGTCACCTATGTCGCTCGATTCCGGCGAGT
TGATGCGGCTCTCGCCGTTGCGCAGCACACCTCCGTGGTCCCCTCGCGCCACTCTCTCCT
CCCCTCCCGTCAGATCCATCTCTCGCGCCCGCAACCCTCACCCGTGGTGGACCTCGTTGC
CAGATCGCTGGATCCGATGGACGTCAGCTCCAACACGACCACGACCACGAGCAGCGGCGG
AGGGAAGGACGGGGACAAGGGCAAGGGCGCCTCGGTCTCCTTCACGGAGGGCGAGAAGGT
GCTCGCCTACCACGGGCCCCTCCTCTACGAGGCCAAGATGGAACGTCGGAGTCGTCTGCA
TCGTGAAAGCTCGGGCCGGCCACGGACCGGCGAGCGACCCCCAGAACTTGTATGCAAAGA
GAAGAAGGGAGAAGATCAACGACAAGCTTTGGGTTTTGCAGAAGCTGGTGCCCAACGGAA
CCAAAGTGGATCTCAGCACTATGCTCGAGGAGGCAGTCCTCTACGTCAAGTTTTTGCAGC
TACAGATCAAGTAGCTCGGAGAGGAAGAAGAAAGAAGAGGAGTTGCATGCTGGATGAATC
TAGATAACTCCAACCCAACCCCAGTACTTGTAGATGTTATACATACAGTAGATGTTATAT
ATTCGGTCATCCACTTTTGACTGTCCGCTCGAGCGGCTCAATGAGCTTAATTTGAGGGCA
AAGAACACAGCTTAACATCTATCTATAGCATCTCTCGCCACATCTTAGTTTCGATTTAGT
GATGCAAAAATAAGTTTAATACTGTATTTAGCAATGTTGAAACTAGAATTGGTAAGTACG
CCCTATCGTGGTAGCTACAAGCTCCTGGTCACCTATATGCTCATCTAATTACAGTGGCGT
TTGAACTAGTTTTGAAACTGATTAGATGGATGTGTGAAGTGCTTCTTCCTTCCTTATAAA
GCTGGCCTATTGTATTGGAACAGATGCGTGAAGTGTTTCTTCCTTCCAGTGGCGTTCGGC
GAATCTGCTACAGTCCGTGTGCTTCATTTCACCAAGTAAAATAAAATCACATGAATGGCG
ATTCAAAATTCTTTACCATTTCCACCGTAATATTTCATTTGTACTATGCACATCTGCTGA
AGATTGATGAGGAAGACTTTGGAGGCCATGCCGCCCTAATTCAGGAGGGGCTCTTTGCCT
CGTTCACCCTTTTCCTGCTTTCATGGACTCTAGTATACAACTTGGCTCACTTTTGAGAAG
CCCGTCTGTAGATCTATGATGCTGGATTTTCGTAGTTCATTTCATTCACTCTTTTGTACA
ATTAGCTATCATGGATGTAATTTCACAGTACTGTAGAACAACGTCATGGAGCTGTACAAT
AACTTATTGTGTTATGTAAACATGAGAGATGTATTATGTGATGTTATATGATGGATGATT
TTAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_365 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None