barSeed - Barley Seed Development Database

Probe CUST_8688_PI390587928

Source Contig U35_14333

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8688_PI390587928	Hv_44K_v2	TATCTGGTGCCCGCGTCTAATTGTCGTGTTAAATCTAAATGTAATTCAGAGTTGAAAAAA	1649	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.033	1.532	1.260	1.017	0.344	0.349
Raw	3314.500	7645.933	5475.223	7279.483	804.955	904.304

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251005.1	1730	3e-21	1662 - 1715	100	54 / 54	plus	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC24152
Harvest21	ABC37170	520	6e-22	50 - 103	100	54 / 54	minus
Harvest21	ABC01510	1726	6e-22	1657 - 1716	97	58 / 60	plus	ABC01510
Harvest35	U35_14333	1719	3e-25	1650 - 1709	100	60 / 60	plus
Harvest35	U35_41888	520	6e-22	50 - 103	100	54 / 54	minus

Contig Sequence (1719 bp)

>U35_14333 1719 Hv_44K_v2
ATTCCCCACTCCACTCCACTCCACTCCACTCTCCTCCCCACCGCCGGCGCCGCCGCACCT
CGTCCGACGAAGATGAGGGAGATCCTGCACATCCAGGGCGGGCAGTGCGGGAACCAGATC
GGGGCCAAGTTCTGGGAGGTGGTGTGCGCGGAGCACGGGATCGACCCCACCGGCCGCTAC
GCCGGCGACACCGACCTGCAGCTCGAGCGCGTCAACGTCTACTACAACGAGGCCTCCTGC
GGCCGCTTCGTGCCCCGCGCCGTCCTCATGGACCTCGAGCCCGGCACCATGGACTCCGTC
CGCTCCGGCCCCTACGGCGGCATCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGC
GCCGGCAACAACTGGGCCAAGGGACACTACACCGAGGGCGCCGAGCTCATCGACTCCGTC
CTCGACGTCGTCCGCAAGGAGGCCGAGAACTGCGACTGCCTCCAAGGTTTCCAGGTGTGC
CACTCGCTGGGCGGCGGCACGGGGTCCGGCATGGGCACGCTGCTCATCTCCAAGATCCGG
GAGGAGTACCCGGACCGCATGATGCTCACCTTCTCCGTCTTCCCCTCGCCCAAGGTCTCC
GACACCGTCGTCGAGCCCTACAACGCCACCCTCTCCGTCCACCAGCTCGTCGAGAACGCC
GACGAGTGCATGGTGCTCGACAACGAGGCGCTCTACGACATCTGCTTCCGCACCCTCAAG
CTCACAACACCGAGCTTCGGCGACCTGAACCACCTCATCTCGGCCACCATGAGCGGGGTC
ACCTGCTGCCTGCGCTTCCCGGGGCAGCTCAACTCGGACCTCCGCAAGCTGGCCGTGAAC
CTCATCCCGTTCCCGCGGCTGCACTTCTTCATGGTGGGCTTCGCGCCGCTGACCTCGCGC
GGCAGCCAGCAGTACCGCGCGCTCACCGTGCCCGAGCTCACCCAGCAGATGTGGGACGCC
AAGAACATGATGTGCGCGGCCGACCCTCGCCACGGCCGCTACCTCACCGCCTCGGCCATG
TTCCGGGGCAAGATGAGCACCAAGGAGGTGGACGAGCAGATGCTGAACGTGCAGAACAAG
AACTCGAGCTACTTCGTGGAGTGGATCCCCAACAACGTCAAGTCGACGGTGTGCGACATC
CCGCCGACGGGCCTCAAGATGGCCTCCACATTCATCGGCAACTCGACGTCCATCCAGGAG
ATGTTCCGGCGCGTGAGCGAGCAGTTCACGGCCATGTTCCGGCGCAAGGCCTTCCTGCAC
TGGTACACGGGTGAGGGCATGGACGAGATGGAGTTCACCGAGGCCGAGAGCAACATGAAC
GACCTGGTGTCCGAGTACCAGCAGTACCAGGACGCCACCGCCGACGAGGAGGGCGAGTAC
GAGGACGAGGAGGACGACGCCGACCTCCAGGACTAGCCCCCGCCCTCTGCGAAATCATCC
ATATGATTATCAATTAACGGTTCTCTTATGTTAATTTGATTATGGTTCTGTAGAAGTGTT
GTGTCTTTCTTAGTGAGTGCTGTTGTTGAGGAGCAGAAAACTCATGGAAGGGTGGTTGCT
GATGAGATTGAGATAGATTGGTGTAAACATCTTGCACAATGGCGGTGTGCAACGCCCTGT
TGCGTTCTACTCCAATTGTAGTGTCTGTTTATCTGGTGCCCGCGTCTAATTGTCGTGTTA
AATCTAAATGTAATTCAGAGTTGAAAAAAAAAAAAAAAA

Homology of Contig U35_14333 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g01530.1	448	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g78210.1	449
Arabidopsis v10	AT5G62700.1	450	\| Symbols: TUB3 \| tubulin beta chain 3 \| chr5:25184501-25186426 FORWARD LENGTH=450