barSeed - Barley Seed Development Database

Probe ABC01508

Source Contig ABC01508

barSeed

Links

Affymetrix Source Sequence (1919 bp)

>ABC01508 1919
CCCAATCCCCATCCCCTCTCACTCCCCCACGCGCGACGCGAGCGCTGCAGTCCTCTCCGC
AGGGAGGCGAAGATGAGGGAGATCCTGCACATCCAGGGCGGGCAGTGCGGGAACCAGATC
GGGTCCAAGTTCTGGGAGGTGGTGTGCGACGAGCACGGCATCGACCCCACGGGGAGGTAC
GTCGGCACGTCCGACCTGCAGCTGGAGCGCGTCAACGTCTACTACAACGAGGCCTCATGC
GGCCGCTTCGTGCCGCGCGCCGTGCTCATGGATCTCGAGCCCGGCACCATGGACTCCGTC
CGCACGGGGCCGTACGGCCAGATCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCCGGC
GCCGGCAACAACTGGGCCAAGGGACACTACACCGAGGGCGCGGAGCTCATCGACTCCGTC
CTCGACGTCGTCCGCAAGGAGGCTGAGAACTGCGACTGCCTCCAAGGCTTCCAGGTGTGC
CACTCCCTGGGCGGGGGCACCGGTTCCGGCATGGGCACGCTGCTGATTTCCAAGATCAGG
GAGGAGTACCCTGACCGGATGATGCTCACCTTCTCCGTGTTCCCATCCCCCAAGGTGTCT
GACACCGTGGTCGAGCCCTACAACGCCACCCTCTCGGTTCACCAGCTGGTGGAGAACGCG
GACGAGTGCATGGTGCTGGACAACGAGGCGCTCTACGACATCTGCTTCCGCACCCTGAAG
CTGACCACACCTAGCTTTGGTGACCTGAATCATTTGATCAGTGCCACCATGAGCGGTGTC
ACCTGCTGCCTTCGCTTCCCAGGACAGCTGAACTCAGACCTCCGCAAGCTTGCAGTCAAC
CTGATCCCCTTCCCGCGCCTCCACTTCTTCATGGTGGGCTTTGCGCCGCTCACATCTCGT
GGATCGCAGATGTACCGCTCCCTCACTGTCCCAGAACTCACACAGCAAATGTGGGACTCG
AAGAACATGATGTGTGCTGCCGACCCACGCCATGGCCGCTACCTCACAGCCTCAGCCATG
TTCCGTGGCAAGATGAGCACCAAGGAGGTTGATGAGCAGATGATCAACGTGCAGAACAAG
AACTCTTCCTACTTCGTGGAGTGGATCCCGAACAATGTCAAGTCAAGCGTGTGTGACATC
CCACCACGTGGCCTCTCCATGGCGTCCACCTTCATTGGCAACTCCACCTCCATCCAGGAG
ATGTTCCGGCGTGTGAGCGAGCAGTTCACCGCCATGTTCAGGAGGAAGGCTTTCTTGCAT
TGGTACACTGGTGAGGGGATGGACGAGATGGAGTTCACTGAGGCCGAGAGTAACATGAAT
GACCTGGTCTCTGAGTACCAGCAGTACCAGGACGCCACTGCTGACGAGGAGGGCGAGTAC
GAGGAAGAGGACGAGCTGGAGCAGGAGTAAGATCGGTGACAATTGCATCTCCATTTATGT
GGTATTGTGCTTTTCGTACAACTGGAGCTTGTTTTCGTAGGGACTAGAGGGTACCATGGC
TACAAACTATGCTGCTTGTTTGTGTGTCTTGGCATGTGTTGGATTTGTACTGCGTTCGTA
TGTAGGCATGTTCACTCGATGCTATGTTTCTTTGCGTGAATTATTTTATGTGAGGTTTCA
AGCAAGTGGATTTGAAATATAAAGTAGTAGAATGCTTTCAAGTTTGAAAAAAAAAAAAAA
AAAAACTCGAGACTAGTTCTCGAAGACCGCGACAGGGCCGCGGCCCAGGAGGCCGCCGAC
GGCAAGTGACGGTGCCACGTGCTGCTGGCGTGTAGATATACGTGTGAAGGTGTAGGCGTG
CGTGGCGGGTGTACGTGTGAGGCGACGGGTGGTGTGCTGCCGCGTGTGTATGTCTCTACT
CCTCCGAGTGTGCCGAAATGGAATAAAATGGTTTTCTAATCTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_74587.1	1623	0.0	1 - 1615	99	1610 / 1615	None	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC42085
AK251005.1	1730	0.0	80 - 1403	89	1184 / 1327	CUST_16114_PI390587928 CUST_8688_PI390587928	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC24152
AK248169.1	1707	0.0	95 - 1413	87	1148 / 1321	CUST_8689_PI390587928 CUST_15786_PI390587928 CUST_7918_PI390587928	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC42085
AK375223	1791	0.0	137 - 1453	86	1137 / 1319	CUST_18192_PI390587928	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516
AK366305	1848	0.0	87 - 1415	86	1142 / 1331	CUST_191_PI415269222 CUST_8690_PI390587928 CUST_18192_PI390587928	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516
MLOC_60992.1	1862	0.0	82 - 1407	85	1132 / 1327	CUST_15702_PI390587928 CUST_39_PI415269222	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC42085
AK251033.1	1699	0.0	90 - 1418	85	1130 / 1329	CUST_8685_PI390587928	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516
MLOC_60495.2	1445	0.0	330 - 1445	86	962 / 1117	CUST_18192_PI390587928	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516
MLOC_59698.1	1360	0.0	400 - 1360	88	844 / 963	CUST_16114_PI390587928	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC24152
MLOC_7744.1	1340	0.0	310 - 1340	85	876 / 1033	CUST_18192_PI390587928	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516
MLOC_59316.1	1171	0.0	1 - 963	85	824 / 964	None	ABC01503 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516
MLOC_66337.1	1399	0.0	369 - 1396	84	865 / 1028	None	ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512
AK355051	1255	0.0	140 - 1066	85	792 / 928	CUST_15786_PI390587928	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC42085
MLOC_37707.1	1380	0.0	208 - 1138	85	794 / 932	CUST_15786_PI390587928	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC42085
MLOC_37707.2	1387	0.0	74 - 728	86	566 / 656	CUST_8689_PI390587928 CUST_15786_PI390587928 CUST_7918_PI390587928	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC42085
MLOC_60495.1	1354	0.0	541 - 1193	85	557 / 654	CUST_8687_PI390587928 CUST_18192_PI390587928	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516
MLOC_59316.2	1117	3e-176	404 - 1033	84	533 / 631	None	ABC01503 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516
MLOC_58767.1	820	3e-146	405 - 820	89	372 / 416	CUST_8685_PI390587928	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516
MLOC_627.1	676	2e-142	294 - 676	91	348 / 384	None	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511
MLOC_35653.1	349	2e-109	1 - 339	88	298 / 339	None	ABC01503 ABC01506 ABC01508 ABC01510 ABC01511 ABC24152
MLOC_24448.1	447	2e-108	84 - 447	86	316 / 366	None	ABC01503 ABC01506 ABC01508 ABC01509 ABC01510 ABC01511
MLOC_51904.1	1111	6e-94	924 - 1111	100	188 / 188	CUST_912_PI390587928	ABC01508
MLOC_51905.1	342	2e-83	174 - 342	100	169 / 169	CUST_912_PI390587928	ABC01508
MLOC_10566.1	482	3e-66	3 - 209	89	185 / 208	None	ABC01503 ABC01506 ABC01508 ABC01509 ABC01510
MLOC_42065.1	242	2e-58	1 - 163	92	151 / 164	None	ABC01506 ABC01508 ABC01510
MLOC_42815.1	769	6e-54	639 - 769	96	126 / 131	None	ABC01503 ABC01506 ABC01508 ABC01509 ABC01510 ABC01511