barSeed - Barley Seed Development Database

Probe CUST_8690_PI390587928

Source Contig U35_14331

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8690_PI390587928	Hv_44K_v2	GTTTCTTGTCATTGTGAATATTGGGTTTTGGAATGTTTTTGCCTCGCTCTTTGTGTATAA	1730	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.463	1.762	1.546	0.862	0.373	0.290
Raw	1710.195	3077.183	2418.607	2035.307	322.835	275.970

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366305	1848	6e-24	1745 - 1803	100	59 / 59	plus	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516
JLOC1	JLOC1_5109.1	1420	3e-24	1267 - 1325	100	59 / 59	plus
Harvest21	ABC01505	1803	3e-25	16 - 75	100	60 / 60	minus
Harvest35	U35_14331	1805	3e-25	1731 - 1790	100	60 / 60	plus

Contig Sequence (1805 bp)

>U35_14331 1805 Hv_44K_v2
CCCAATCCCCCAGGCCAGCCAGCCAGCGAGCGACCCCCCTCCCCCGCAACCACCACCGGA
CCCCCGGCGAAGCGGCGACGATGAGGGAGATCCTGCACATCCAGGGCGGGCAGTGCGGGA
ACCAGATCGGGGCCAAGTTCTGGGAGGTGATCTGCGACGAGCACGGGATCGACGGCACCG
GGCGCTACGCGGGGGACTCGGACCTGCAGCTGGAGCGGATCAACGTCTACTACAACGAGG
CCAGCGGGGGCCGCTTCGTGCCCCGCGCCGTGCTCATGGACCTCGAGCCCGGCACCATGG
ACTCGGTCCGCTCCGGCCCCTTCGGCCAGATCTTCCGCCCCGACAACTTCGTCTTCGGCC
AGTCCGGCGCCGGCAACAACTGGGCCAAGGGACACTACACCGAGGGCGCCGAGCTCATCG
ACTCCGTCCTCGACGTCGTCCGCAAGGAGGCCGAGAACTGCGACTGCCTCCAGGGGTTCC
AAGTTTGCCATTCTTTGGGAGGAGGCACTGGATCTGGGATGGGCACCCTTCTTATTTCTA
AGATTAGGGAGGAGTACCCTGATCGAATGATGCTGACCTTCTCTGTCTTCCCATCACCAA
AGGTCTCAGACACCGTGGTTGAGCCATACAATGCTACGCTTTCCGTTCACCAACTCGTTG
AGAACGCTGATGAGTGTATGGTGCTTGACAATGAAGCTCTGTACGACATATGCTTCCGCA
CACTAAAGCTTGCCACCCCTTCGTTTGGTGACCTGAACCATCTTATCTCTGCTACCATGA
GTGGTGTCACATGCTGCCTGAGGTTCCCTGGACAACTCAACTCTGATCTTCGCAAGCTTG
CTGTGAATCTCATCCCGTTCCCCCGCCTCCACTTCTTCATGGTCGGCTTTGCCCCGCTGA
CGTCGCGCGGGTCACAAATGTACCGTGCTCTCACTGTCCCTGAGCTGACCCAGCAAATGT
GGGATGCCAAGAACATGATGTGTGCCGCAGACCCCCGCCACGGCCGCTACCTCACCGCCT
CGGCCTGCTTCCGAGGCAAGATGAGCACCAAGGAGGTGGACGAGCAGATGCTCAACGTCC
AGAACAAGAACTCGTCGTACTTTGTGGAGTGGATCCCCAACAACGTCAAGTCGAGCGTGT
GCGACATGCCGCCCAGGGGCCTGAAGATGGCGGGCACCTTCGTCGGCAACTCCACGTCCA
TCCAGGAGATGTTCCGCCGGGTGAGCGAGCAGTTCACGGCCATGTTCAGGAGGAAGGCCT
TCTTGCACTGGTACACGGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCTGAGAGCA
ACATGAACGACCTTGTCGCCGAGTACCAGCAGTACCAGGACGCGACCGCCGATGAAGAGT
ATGACGAGGAGGAGGAAGAGGAACGCGACGCAGAGTAGCGGCAACGGATGCGCTCCGCTC
CGCTCCGTGCAGCTATATGTCCACCGCTTCAGGTCGTGTCCAGTGAGAGTTTGTGGTTTC
CCCGTGGCTTGGATGAGTCGAGGTTGCGTCGTGTGCCCCGTTTTGTAATTTGCTACGGTT
AGTAGTGCGTTGCAGTCTGTCTTGTTCAGCATCCTTTGGTCGGTACCTGACGACGGCCTC
AACTGTCGAGTGCTCTCCTTGAGCTAGTCGTCGCCTCCTTGTAAGTTCTGACAAGTATTA
TTGTTATTATTAGTCGTTCGCTTCAGCAACAAAAAAAAAAAAAAAAAATGGTTTCTTGTC
ATTGTGAATATTGGGTTTTGGAATGTTTTTGCCTCGCTCTTTGTGTATAAAAAAAAAAAA
AAAAA

Homology of Contig U35_14331 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g56810.1	445	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g06800.1	445
Arabidopsis v10	AT5G23860.1	449	\| Symbols: TUB8 \| tubulin beta 8 \| chr5:8042962-8044528 FORWARD LENGTH=449