barSeed - Barley Seed Development Database

Probe CUST_191_PI415269222

Source Contig TA28514_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_191_PI415269222	Hv_44K_v2	TGGTTTCTTGTCATTGTGAATATTGGGTTTTGGAATGTTTTTGCCTCGCTCTTTGTGTAT	1741	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.466	1.720	1.494	0.840	0.376	0.289
Raw	2122.317	3693.830	2903.007	2467.612	404.666	338.486

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366305	1848	2e-24	1743 - 1802	100	60 / 60	plus	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516
JLOC1	JLOC1_5109.1	1420	8e-25	1265 - 1324	100	60 / 60	plus
Harvest21	ABC01505	1803	3e-25	18 - 77	100	60 / 60	minus
Harvest35	U35_14331	1805	3e-25	1729 - 1788	100	60 / 60	plus

Contig Sequence (1801 bp)

>TA28514_4513 1801 Hv_44K_v2
GGGGCACGAGGCCCCAATCCCCCAGGCCAGCCAGCCAGCGAGCGACCCCCCTCCCCCGCA
ACCACCACCGGACCCCCGGCGAAGCGGCGACGATGAGGGAGATCCTGCACATCCAGGGCG
GGCAGTGCGGGAACCAGATCGGGGCCAAGTTCTGGGAGGTGATCTGCGACGAGCACGGGA
TCGACGGCACCGGGCGCTACGCGGGGGACTCGGACCTGCAGCTGGAGCGGATCAACGTCT
ACTACAACGAGGCCAGCGGGGGCCGCTTCGTGCCCCGCGCCGTGCTCATGGACCTCGAGC
CCGGCACCATGGACTCGGTCCGCTCCGGCCCCTTCGGCCAGATCTTCCGCCCCGACAACT
TCGTCTTCGGCCAGTCCGGCGCCGGCAACAACTGGGCCAAGGGACACTACACCGAGGGCG
CCGAGCTCATCGACTCCGTCCTCGACGTCGTCCGCAAGGAGGCCGAGAACTGCGACTGCC
TCCAGGGGTTCCAAGTTTGCCATTCTTTGGGAGGAGGCACTGGATCTGGGATGGGCACCC
TTCTTATTTCTAAGATTAGGGAGGAGTACCCTGATCGAATGATGCTGACCTTCTCTGTCT
TCCCATCACCAAAGGTCTCAGACACCGTGGTTGAGCCATACAATGCTACGCTTTCCGTTC
ACCAACTCGTTGAGAACGCTGATGAGTGTATGGTGCTTGACAATGAAGCTCTGTACGACA
TATGCTTCCGCACACTAAAGCTTGCCACCCCTTCGTTTGGTGACCTGAACCATCTTATCT
CTGCTACCATGAGTGGTGTCACATGCTGCCTGAGGTTCCCTGGACAACTCAACTCTGATC
TTCGCAAGCTTGCTGTGAATCTCATCCCGTTCCCCCGCCTCCACTTCTTCATGGTCGGCT
TTGCCCCGCTGACGTCGCGCGGGTCACAAATGTACCGTGCTCTCACTGTCCCTGAGCTGA
CCCAGCAAATGTGGGATGCCAAGAACATGATGTGTGCCGCAGACCCCCGCCACGGCCGCT
ACCTCACCGCCTCGGCCTGCTTCCGAGGCAAGATGAGCACCAAGGAGGTGGACGAGCAGA
TGCTCAACGTCCAGAACAAGAACTCGTCGTACTTTGTGGAGTGGATCCCCAACAACGTCA
AGTCGAGCGTGTGCGACATGCCGCCCAGGGGCCTGAAGATGGCGGGCACCTTCGTCGGCA
ACTCCACGTCCATCCAGGAGATGTTCCGCCGGGTGAGCGAGCAGTTCACGGCCATGTTCA
GGAGGAAGGCCTTCTTGCACTGGTACACGGGCGAGGGCATGGACGAGATGGAGTTCACCG
AGGCTGAGAGCAACATGAACGACCTTGTCGCCGAGTACCAGCAGTACCAGGACGCGACCG
CCGATGAAGAGTATGACGAGGAGGAGGAAGAGGAACGCGACGCAGAGTAGCGGCAACGGA
TGCGCTCCGCTCCGCTCCGTGCAGCTATATGTCCACCGCTTCAGGTCGTGTCCAGTGAGA
GTTTGTGGTTTCCCCGTGGCTTGGATGAGTCGAGGTTGCGTCGTGTGCCCCGTTTTGTAA
TTTGCTACGGTTAGTAGTGCGTTGCAGTCTGTCTTGTTCAGCATCCTTTGGTCGGTACCT
GACGACGGCCTCAACTGTCGAGTGCTCTCCTTGAGCTAGTCGTCGCCTCCTTGTAAGTTC
TGACAAGTATTATTGTTATTATTAGTCGTTCGCTTCAGCAACAACAAAGGACTATTGGTA
GTGGTTTCTTGTCATTGTGAATATTGGGTTTTGGAATGTTTTTGCCTCGCTCTTTGTGTA
T

Homology of Contig TA28514_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g56810.1	445	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g06800.1	445
Arabidopsis v10	AT5G23860.1	449	\| Symbols: TUB8 \| tubulin beta 8 \| chr5:8042962-8044528 FORWARD LENGTH=449