barSeed - Barley Seed Development Database

Probe CUST_39_PI415269222

Source Contig TA28139_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39_PI415269222	Hv_44K_v2	GTGAATTCAGGCTTTCTGAGTTGGTATTTCTTTGCAAATTGTTTCGGCAAAATGTTTGCA	1672	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.551	1.462	1.279	0.912	0.290	0.283
Raw	11167.913	15944.703	12373.633	13796.693	1562.853	1657.453

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60992.1	1862	2e-24	1668 - 1727	100	60 / 60	plus	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC42085
JLOC1	JLOC1_39813.1	2197	8e-25	1811 - 1870	100	60 / 60	plus

Contig Sequence (1735 bp)

>TA28139_4513 1735 Hv_44K_v2
TTCGGCACGAGGCACACCCCCTCCTACTCCCCCCGCTCTCCCTCTCGCCGCCGACTGTTC
TCGTTGCGCGAACCATCTCATACCTCGGCGAAGATGAGGGAGATCCTGCACATCCAGGGT
GGGCAATGTGGCAACCAGATCGGTGCCAAGTTCTGGGAGGTGGTGTGTGATGAGCATGGC
ATTGACCCAACTGGGCGCTACACCGGTACCTCTGACCTGCAGTTGGAGCGTGTCAATGTC
TACTACAATGAGGCCTCCTGTGGTCGCTTTGTGCCCCGTGCAGTTCTTATGGACCTTGAG
CCGGGTACCATGGACAGTGTCCGCACTGGGCCTTATGGGCAGATCTTCCGCCCTGACAAC
TTTGTCTTTGGGCAATCTGGTGCTGGTAACAACTGGGCCAAGGGCCACTACACCGAGGGT
GCTGAGCTTATCGATTCTGTTTTGGATGTTGTGAGGAAGGAGGCTGAGAACTGTGACTGT
CTGCAAGGATTCCAAGTATGCCACTCCCTTGGTGGTGGTACTGGATCTGGCATGGGTACC
CTGTTGATATCTAAAATCAGGGAGGAGTACCCTGACCGCATGATGCTGACGTTCTCAGTG
TTCCCCTCACCAAAAGTATCTGACACTGTGGTTGAGCCATACAATGCAACTCTCTCAGTC
CATCAGTTGGTTGAGAATGCTGATGAGTGCATGGTTCTTGACAACGAGGCTCTCTATGAC
ATCTGTTTCAGGACTCTTAAGCTGACCACACCTAGCTTTGGGGACTTGAACCATCTAATC
TCTGCTACCATGAGTGGAGTCACATGCTGCCTGAGGTTCCCTGGTCAGCTGAATTCCGAC
CTCCGGAAGCTGGCAGTGAACCTTATCCCCTTCCCTCGCCTCCACTTCTTCATGGTGGGC
TTTGCTCCATTGACATCCCGTGGGTCTCAGCAGTACCGTGCCCTCACGGTCCCAGAACTC
ACCCAGCAAATGTGGGATGCCAAGAACATGATGTGCGCCGCCGATCCTCGCCATGGCCGT
TACCTCACCGCCTCTGCCATGTTCCGTGGTAAGATGAGCACAAAGGAGGTTGATGAGCAG
ATGATCAACGTCCAGAACAAGAACTCGTCCTACTTCGTGGAGTGGATCCCCAACAACGTG
AAGTCCAGCGTCTGTGACATCCCGCCGACAGGGCTCTCGATGGCGTCCACCTTCGTCGGC
AACTCGACCTCCATCCAGGAGATGTTCCGGAGGGTGAGCGAGCAGTTCACTGCCATGTTC
AGGAGGAAGGCTTTCTTGCATTGGTACACTGGCGAAGGCATGGACGAGATGGAGTTCACC
GAGGCCGAGAGCAACATGAACGACCTCGTCTCAGAGTACCAGCAGTACCAGGATGCCACT
GCCGACGAGGAGGGCGAGTACGAGGATGAGGATCAGGAGGCCGAGGACGACATGTAAGGA
GGGGGAGGTCTGTGTGGTGCTTTGCTGGGTGGGGGTTCTAGGGGCAGAGTTTGATCTGTT
TGGTGCTTTGTTATGAATCTGTTTATCATCGCAACTACCGCTTGTACGCCACCGCCATTC
TTCCTGCCTTTCCTAAGCTTTGTATTTTCCATGTTATGGCACCTTCTGGGTATTGTATCA
CTTGATGCCGTACGGTATGTTCTGTGTCGGACATTTCTGGACCTCTCTGGTGGTGAATTC
AGGCTTTCTGAGTTGGTATTTCTTTGCAAATTGTTTCGGCAAAATGTTTGCAGGG

Homology of Contig TA28139_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g59150.2	448	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g52790.1	448
Arabidopsis v10	AT5G12250.1	449	\| Symbols: TUB6 \| beta-6 tubulin \| chr5:3961317-3962971 REVERSE LENGTH=449