barSeed - Barley Seed Development Database

Probe CUST_8197_PI390587928

Source Contig U35_5348

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8197_PI390587928	Hv_44K_v2	GGATAAGTTGTGTAATGGGGTGTTTTTGAATTTACAATTACCCAGGCAGGACAGAAAAAA	1263	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.782	1.562	1.072	0.819	0.306	0.294
Raw	1432.803	1959.425	1189.248	1412.952	188.020	195.811

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248623.1	1336	2e-23	1268 - 1325	100	58 / 58	plus	ABC11496 ABC11497 ABC24152
MLOC	MLOC_39522.1	417	2e-23	67 - 124	100	58 / 58	minus	ABC11497
JLOC1	JLOC1_25773.1	418	1e-23	49 - 106	100	58 / 58	minus
Harvest21	ABC11497	402	3e-25	332 - 391	100	60 / 60	plus	ABC11497
Harvest35	U35_5348	1334	3e-25	1264 - 1323	100	60 / 60	plus

Contig Sequence (1334 bp)

>U35_5348 1334 Hv_44K_v2
GCAAACCCCCTCTCCTCCCGCCGCCGTCATAAACCCACCAAAGCTCCCCCCTTTCGACCG
CGCCGCCTCTCACTCCGGCCTCCGCCGCTCCACCTCCCTTTCCCTCCGCTCCGCCGGCCT
CTCCCAGCCTCGCTCGCTCCGCCGTTTGGGTTTCCCCACCGGCGGGGGACAAGATGAGCG
ACGACGTGATATGGCACTGCATCCGCCACAACCACTGCAGCTTCATGGCCAAGATCGAGA
CGGGGATATTCTGCCGGAACCCCTACAACGCCACCGGCATATGCAACCGGAGCTCCTGCC
CGCTCGCCAACAGCCGCTACGCCACCATCCGGGACCACGACGGTGTTTTCTACTTATACA
TGAAAACTGCTGAAAGAGCTCACATGCCAAACAAATTATGGGAGAGAGTCAAACTACCCA
GGAATTATGAGAAAGCAATGGAAATCATCAACAAGCACCTCGAATTCTGGCCCAAGCTAC
TTGTGCACAAGATCAAACAGCGCCTGACAAAAATGACTCAGTATCGGATAAGAATGAGGA
GACTTCAACTTAAAGTGAGAGAGAAGATAATGACAGTCCCGAGGAAGAAAACTCAGCGCG
ATCTCCGAAGATTGGAGAAAGCTGAAAAGGCTGCTCAACTAGATAAGAGTATTGAAAGTG
AACTAAAGGAGCGTCTGAGAAAGGGTGTCTATGGTGAAATTTATAATTTCCCCTTCAAGC
AGTTTGATACTATCCTTGACATGGAAAAAGATGAGTTGGCTCCTGAGATAGAAGAGGAAG
AAGAAGGCGAGATAGAGTATGTTGAAGGTGATGATATCGAGATGGGTGACATGGATGATA
TGGAAGATTTTGAAGGCTTTGGTGATGAAGATGATGATGGAGATGAAGATGATATGGAAG
AGCCAGTAACAAAGAAACCCAAGCGATCAGACTCTGATTCAAGTTCAAAGATTGGGCGGA
AATCTAGGAAGGTTATCACCGAGGTGGAAGAAGACGAGGACAGGGGTAGCAGGCAAAGGA
CGCGGATGTGATTCTCCAGGCACGGCTTCAGTAACATGCTTGGTGTCGATGATACTTTAG
ATAATTTTGCCTGTCTTTCTCATGATAATCTGTAGAATTCATATGTTGGTTATTTTGCGG
CGAATATGGAAACTGACATGAACGATGACTTGAAACAATGTTGTACCTGGAGCAGTGTTG
AGTGTCTCTGATCACGATCAGAACCGGTTTTGTGCGAAGCTGCAGCGAAATGTAAACTGT
TAAGGATAAGTTGTGTAATGGGGTGTTTTTGAATTTACAATTACCCAGGCAGGACAGAAA
AAAAAAAAAAAAAA

Homology of Contig U35_5348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g16950.4	291	2e-126	protein\|Mak16 protein domain containing protein, expressed
Brachypodium v1_2	Bradi2g14350.1	288	2e-129
Arabidopsis v10	AT1G23280.1	303	8e-96	MAK16 protein-related \| chr1:8260865-8262650 REVERSE LENGTH=303