barSeed - Barley Seed Development Database

Probe ABC01964

Source Contig ABC01964

barSeed

Links

Affymetrix Source Sequence (1174 bp)

>ABC01964 1174
GGGAAGGCGGTGAACCTCTTCACCGCCGTCAACCAGGCGCTCCACATCGCGCTCGACACC
GACCCGCGCTCTTACGTCTTTGGAGAGGATGTGGGTTTCGGCGGCGTCTTCCGCTGCACG
ACGGGCCTAGCCGAACGATTCGGGAAACAGAGAGTATTCAATACGCCATTGTGTGAACAG
GGTATTGCCGGATTTGCTATTGGCTTAGCAGCAATGGACAATAGAGCTATTGCTGAAATC
CAGTTTGCAGATTATATCTTTCCAGCATTTGATCAGATTGTCAACGAAGCCGCTAAATTC
AGATACCGAAGTGGAAATGAATTTAACTGTGGAGGTTTAACAATTCGATCTCCATATGGT
GCTGTTGGACATGGTGGTCACTACCATTCACAGTCACCAGAGGCTTTCTTCTGCCATGTT
CCTGGCCTGAAGGTTGTCATACCTCGGAGTCCACGTGAGGCCAAGGGACTGTTGCTGGCC
AGCATTCGTGACCCAAACCCAGTCATCTTTTTCGAGCCAAAGTGGCTGTACCGTTTGGCT
GTTGAAGAAGTTCCTGAGGGGGACTATATGCTGCCTTTATCCCAGGCGGAAGTGATCCGC
AAAGGAAGTGATATAACCACTTGTTGGTTGGGGAGCTCAACTTGCAGTGTTGGCACAAGC
ATGTGAAGATGCTTCAAAGGATGGAATTTCTTGCGAGCTCATAGATCTAAGAACGCTAAT
TCCATGGGACAAGGAAACAGTCGAGGCCTCTGTCAGCAAGACCGGAAAGCTTCTTGTTAG
TCATGAGGCCCCAGTCACAGGAGGGTTTGGTGCAGAAATCGCTGCATCCATTGCTGAGCG
CTGCTTCCAGAGGTTAGAAGCGCCTGTCGCGAGGGTCTGCGGCCTCGACACCCCTTTCCC
ACTTGTTTATGAACAATTCTACATGCCCACAAAGAACAAGATCGTGGATGCTATTAAAGC
AACTGTAAATTACTGAGGTTGGTGCACGAGGACATCAAGCTGGTATATATTGCTGTATGT
AGAAACTGCCATTATGTATGTATGTGTATAAGTGACTATATTGCTGGTCTGTGGCCTAAA
TGCACATCCACAAACCAGGTTATCCGAGATAACACCAATAAAATATTTAAGCCAGAAGGT
AAATATCATAAAAAAATAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK359213	1450	0.0	315 - 1450	99	1131 / 1137	CUST_29100_PI390587928 CUST_29315_PI390587928 CUST_29317_PI390587928	ABC01964 ABC01965 ABC43517 ABC49788
MLOC_21803.2	1296	2e-66	933 - 1097	95	158 / 167	None	ABC01964 ABC01965 ABC43517 ABC49788
MLOC_21803.3	1136	4e-64	916 - 1075	94	154 / 163	None	ABC01964 ABC01965 ABC43517 ABC49788
MLOC_21803.4	1021	4e-64	801 - 960	94	154 / 163	None	ABC01964 ABC01965 ABC43517
MLOC_31678.1	239	7e-111	1 - 236	97	230 / 236	CUST_29317_PI390587928	ABC01964
MLOC_27510.1	247	3e-110	3 - 219	100	217 / 217	None	ABC01964
MLOC_21803.1	1237	7e-106	310 - 531	98	218 / 222	CUST_29315_PI390587928	ABC01964 ABC49788
MLOC_27510.2	231	1e-89	26 - 205	100	180 / 180	None	ABC01964
MLOC_30478.1	189	7e-81	2 - 189	96	180 / 188	None	ABC01964
MLOC_47814.1	158	1e-64	1 - 156	96	149 / 156	None	ABC01964 ABC01965
MLOC_41934.1	192	2e-56	61 - 192	97	129 / 133	None	ABC01964 ABC43517